Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0385 and Echvi_0386 are separated by 393 nucleotides Echvi_0386 and Echvi_0387 are separated by 16 nucleotides Echvi_0387 and Echvi_0388 are separated by 577 nucleotides
Echvi_0385: Echvi_0385 - Predicted transcription factor, homolog of eukaryotic MBF1, at 412,764 to 413,048
_0385
Echvi_0386: Echvi_0386 - hypothetical protein, at 413,442 to 413,768
_0386
Echvi_0387: Echvi_0387 - Helix-turn-helix., at 413,785 to 414,171
_0387
Echvi_0388: Echvi_0388 - hypothetical protein, at 414,749 to 415,171
_0388
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 412.826 kb on + strand, within Echvi_0385 at 412.834 kb on - strand, within Echvi_0385 at 412.834 kb on - strand, within Echvi_0385 at 412.836 kb on - strand, within Echvi_0385 at 412.878 kb on + strand, within Echvi_0385 at 412.878 kb on + strand, within Echvi_0385 at 412.879 kb on - strand, within Echvi_0385 at 412.879 kb on - strand, within Echvi_0385 at 412.976 kb on - strand, within Echvi_0385 at 412.983 kb on + strand, within Echvi_0385 at 412.991 kb on + strand, within Echvi_0385 at 412.992 kb on - strand, within Echvi_0385 at 413.007 kb on - strand, within Echvi_0385 at 413.007 kb on - strand, within Echvi_0385 at 413.016 kb on + strand, within Echvi_0385 at 413.041 kb on + strand at 413.042 kb on - strand at 413.048 kb on + strand at 413.049 kb on - strand at 413.049 kb on - strand at 413.049 kb on - strand at 413.061 kb on + strand at 413.062 kb on - strand at 413.086 kb on + strand at 413.185 kb on - strand at 413.191 kb on + strand at 413.239 kb on + strand at 413.293 kb on + strand at 413.310 kb on + strand at 413.347 kb on - strand at 413.349 kb on + strand at 413.350 kb on - strand at 413.421 kb on - strand at 413.428 kb on + strand at 413.438 kb on - strand at 413.439 kb on + strand at 413.443 kb on + strand at 413.443 kb on + strand at 413.497 kb on + strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.568 kb on - strand, within Echvi_0386 at 413.568 kb on - strand, within Echvi_0386 at 413.569 kb on + strand, within Echvi_0386 at 413.569 kb on + strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.576 kb on + strand, within Echvi_0386 at 413.577 kb on - strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.582 kb on + strand, within Echvi_0386 at 413.583 kb on - strand, within Echvi_0386 at 413.613 kb on + strand, within Echvi_0386 at 413.645 kb on + strand, within Echvi_0386 at 413.645 kb on + strand, within Echvi_0386 at 413.708 kb on + strand, within Echvi_0386 at 413.709 kb on - strand, within Echvi_0386 at 413.709 kb on - strand, within Echvi_0386 at 413.768 kb on + strand at 413.768 kb on + strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.780 kb on + strand at 413.781 kb on - strand at 413.781 kb on - strand at 413.793 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.821 kb on - strand at 413.857 kb on + strand, within Echvi_0387 at 413.949 kb on + strand, within Echvi_0387 at 413.972 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.035 kb on + strand, within Echvi_0387 at 414.081 kb on + strand, within Echvi_0387 at 414.082 kb on - strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.111 kb on + strand, within Echvi_0387 at 414.112 kb on - strand, within Echvi_0387 at 414.112 kb on - strand, within Echvi_0387 at 414.114 kb on + strand, within Echvi_0387 at 414.114 kb on + strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.115 kb on - strand, within Echvi_0387 at 414.121 kb on + strand, within Echvi_0387 at 414.172 kb on - strand at 414.172 kb on - strand at 414.175 kb on + strand at 414.176 kb on - strand at 414.176 kb on - strand at 414.182 kb on + strand at 414.182 kb on + strand at 414.183 kb on - strand at 414.187 kb on - strand at 414.193 kb on - strand at 414.193 kb on - strand at 414.204 kb on + strand at 414.204 kb on + strand at 414.233 kb on + strand at 414.233 kb on + strand at 414.234 kb on - strand at 414.237 kb on + strand at 414.246 kb on - strand at 414.246 kb on - strand at 414.247 kb on + strand at 414.314 kb on + strand at 414.314 kb on + strand at 414.315 kb on - strand at 414.320 kb on + strand at 414.320 kb on + strand at 414.321 kb on - strand at 414.321 kb on - strand at 414.460 kb on + strand at 414.479 kb on - strand at 414.499 kb on + strand at 414.512 kb on + strand at 414.520 kb on + strand at 414.520 kb on + strand at 414.523 kb on + strand at 414.551 kb on + strand at 414.552 kb on - strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.567 kb on + strand at 414.574 kb on - strand at 414.588 kb on + strand at 414.588 kb on + strand at 414.601 kb on - strand at 414.603 kb on + strand at 414.634 kb on - strand at 414.640 kb on - strand at 414.653 kb on - strand at 414.669 kb on - strand at 414.880 kb on - strand, within Echvi_0388 at 414.882 kb on + strand, within Echvi_0388 at 414.900 kb on + strand, within Echvi_0388 at 414.911 kb on - strand, within Echvi_0388 at 414.941 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 415.006 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.147 kb on - strand at 415.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 412,826 + Echvi_0385 0.22 -0.9 412,834 - Echvi_0385 0.25 -0.7 412,834 - Echvi_0385 0.25 -0.6 412,836 - Echvi_0385 0.25 +0.3 412,878 + Echvi_0385 0.40 -1.1 412,878 + Echvi_0385 0.40 -0.5 412,879 - Echvi_0385 0.40 +1.0 412,879 - Echvi_0385 0.40 -0.6 412,976 - Echvi_0385 0.74 -1.3 412,983 + Echvi_0385 0.77 +2.1 412,991 + Echvi_0385 0.80 -0.7 412,992 - Echvi_0385 0.80 -1.1 413,007 - Echvi_0385 0.85 +1.1 413,007 - Echvi_0385 0.85 +0.6 413,016 + Echvi_0385 0.88 +0.7 413,041 + -1.6 413,042 - +0.1 413,048 + -0.7 413,049 - +1.6 413,049 - -0.5 413,049 - +1.1 413,061 + +1.7 413,062 - +0.1 413,086 + -2.6 413,185 - +0.8 413,191 + +1.4 413,239 + -0.7 413,293 + +0.6 413,310 + -0.3 413,347 - -0.3 413,349 + +0.2 413,350 - +0.3 413,421 - +0.8 413,428 + +0.6 413,438 - -0.2 413,439 + +0.6 413,443 + -1.3 413,443 + +0.8 413,497 + Echvi_0386 0.17 -1.0 413,544 - Echvi_0386 0.31 +1.0 413,544 - Echvi_0386 0.31 -0.8 413,544 - Echvi_0386 0.31 -0.3 413,561 + Echvi_0386 0.36 +0.1 413,561 + Echvi_0386 0.36 +0.7 413,561 + Echvi_0386 0.36 +0.8 413,568 - Echvi_0386 0.39 +0.5 413,568 - Echvi_0386 0.39 -0.5 413,569 + Echvi_0386 0.39 -0.6 413,569 + Echvi_0386 0.39 -0.7 413,570 - Echvi_0386 0.39 +0.8 413,570 - Echvi_0386 0.39 +2.1 413,570 - Echvi_0386 0.39 -1.3 413,576 + Echvi_0386 0.41 +0.8 413,577 - Echvi_0386 0.41 -0.4 413,578 + Echvi_0386 0.42 -0.8 413,578 + Echvi_0386 0.42 +0.1 413,578 + Echvi_0386 0.42 -1.1 413,578 + Echvi_0386 0.42 -0.7 413,578 + Echvi_0386 0.42 +0.5 413,578 + Echvi_0386 0.42 +0.5 413,578 + Echvi_0386 0.42 +0.8 413,578 + Echvi_0386 0.42 -0.6 413,578 + Echvi_0386 0.42 +0.3 413,578 + Echvi_0386 0.42 -0.1 413,579 - Echvi_0386 0.42 -0.9 413,579 - Echvi_0386 0.42 +1.1 413,579 - Echvi_0386 0.42 +0.7 413,582 + Echvi_0386 0.43 -2.1 413,583 - Echvi_0386 0.43 +0.2 413,613 + Echvi_0386 0.52 -0.3 413,645 + Echvi_0386 0.62 -1.3 413,645 + Echvi_0386 0.62 -0.9 413,708 + Echvi_0386 0.81 -0.7 413,709 - Echvi_0386 0.82 +0.3 413,709 - Echvi_0386 0.82 -2.1 413,768 + -0.8 413,768 + -0.7 413,769 - +0.3 413,769 - -2.0 413,769 - -0.8 413,780 + -0.5 413,781 - -0.8 413,781 - -0.1 413,793 + -1.2 413,820 + -0.2 413,820 + -1.4 413,820 + -0.1 413,820 + +0.8 413,820 + +0.2 413,821 - +0.5 413,857 + Echvi_0387 0.19 +0.1 413,949 + Echvi_0387 0.42 -0.8 413,972 + Echvi_0387 0.48 -0.9 414,026 + Echvi_0387 0.62 -1.2 414,026 + Echvi_0387 0.62 -0.9 414,027 - Echvi_0387 0.63 -1.7 414,027 - Echvi_0387 0.63 -0.5 414,027 - Echvi_0387 0.63 -1.1 414,027 - Echvi_0387 0.63 -0.1 414,035 + Echvi_0387 0.65 +1.0 414,081 + Echvi_0387 0.76 -0.1 414,082 - Echvi_0387 0.77 -0.1 414,111 + Echvi_0387 0.84 -1.3 414,111 + Echvi_0387 0.84 -1.0 414,111 + Echvi_0387 0.84 -1.4 414,112 - Echvi_0387 0.84 -2.1 414,112 - Echvi_0387 0.84 +1.9 414,114 + Echvi_0387 0.85 -0.5 414,114 + Echvi_0387 0.85 +0.2 414,115 - Echvi_0387 0.85 +0.2 414,115 - Echvi_0387 0.85 -1.3 414,115 - Echvi_0387 0.85 -0.5 414,115 - Echvi_0387 0.85 -0.5 414,115 - Echvi_0387 0.85 +0.7 414,115 - Echvi_0387 0.85 +0.4 414,121 + Echvi_0387 0.87 -1.3 414,172 - +2.1 414,172 - +0.1 414,175 + +0.9 414,176 - -0.0 414,176 - +3.9 414,182 + +1.4 414,182 + +0.1 414,183 - +1.7 414,187 - -0.3 414,193 - -0.5 414,193 - -1.9 414,204 + -0.1 414,204 + +0.8 414,233 + +0.3 414,233 + -1.1 414,234 - +0.1 414,237 + +0.1 414,246 - +0.5 414,246 - -1.0 414,247 + +1.7 414,314 + -1.2 414,314 + -1.0 414,315 - -0.8 414,320 + -0.5 414,320 + -0.8 414,321 - -0.7 414,321 - -0.2 414,460 + +1.9 414,479 - -0.4 414,499 + -0.4 414,512 + +0.4 414,520 + -0.7 414,520 + -1.5 414,523 + +0.4 414,551 + -0.8 414,552 - +0.3 414,567 + +0.1 414,567 + -0.1 414,567 + +0.5 414,567 + +0.4 414,567 + -0.8 414,574 - -1.2 414,588 + -0.9 414,588 + +1.1 414,601 - -0.1 414,603 + -0.8 414,634 - +0.8 414,640 - +0.8 414,653 - -0.1 414,669 - -0.1 414,880 - Echvi_0388 0.31 -0.3 414,882 + Echvi_0388 0.31 -0.1 414,900 + Echvi_0388 0.36 +0.0 414,911 - Echvi_0388 0.38 +0.8 414,941 - Echvi_0388 0.45 -0.1 414,992 - Echvi_0388 0.57 -0.1 414,992 - Echvi_0388 0.57 +0.7 414,992 - Echvi_0388 0.57 +0.7 414,992 - Echvi_0388 0.57 -0.1 415,006 + Echvi_0388 0.61 -0.3 415,048 + Echvi_0388 0.71 +0.6 415,048 + Echvi_0388 0.71 -0.7 415,049 - Echvi_0388 0.71 +0.0 415,049 - Echvi_0388 0.71 +0.6 415,049 - Echvi_0388 0.71 +0.6 415,147 - -0.5 415,166 - +0.2
Or see this region's nucleotide sequence