Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0293

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0292 and Echvi_0293 are separated by 131 nucleotidesEchvi_0293 and Echvi_0294 overlap by 1 nucleotides Echvi_0292: Echvi_0292 - Superfamily I DNA and RNA helicases, at 300,679 to 302,937 _0292 Echvi_0293: Echvi_0293 - hypothetical protein, at 303,069 to 303,737 _0293 Echvi_0294: Echvi_0294 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 303,737 to 305,044 _0294 Position (kb) 303 304Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 302.900 kb on + strandat 302.900 kb on + strandat 302.903 kb on + strandat 302.903 kb on + strandat 302.903 kb on + strandat 302.939 kb on - strandat 302.985 kb on + strandat 302.985 kb on + strandat 302.985 kb on + strandat 302.985 kb on + strandat 302.987 kb on + strandat 302.994 kb on + strandat 302.994 kb on + strandat 302.994 kb on + strandat 302.994 kb on + strandat 302.994 kb on + strandat 303.049 kb on + strandat 303.144 kb on + strand, within Echvi_0293at 303.144 kb on + strand, within Echvi_0293at 303.144 kb on + strand, within Echvi_0293at 303.146 kb on + strandat 303.146 kb on + strand, within Echvi_0293at 303.146 kb on + strand, within Echvi_0293at 303.191 kb on + strand, within Echvi_0293at 303.461 kb on + strand, within Echvi_0293at 303.465 kb on + strand, within Echvi_0293at 303.713 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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302,900 + +2.1
302,900 + +0.9
302,903 + -0.7
302,903 + +3.3
302,903 + +2.8
302,939 - -1.1
302,985 + +1.2
302,985 + +1.5
302,985 + +2.6
302,985 + +1.4
302,987 + +1.6
302,994 + +0.7
302,994 + +2.3
302,994 + +2.8
302,994 + +1.6
302,994 + +1.5
303,049 + +1.9
303,144 + Echvi_0293 0.11 -0.5
303,144 + Echvi_0293 0.11 +1.5
303,144 + Echvi_0293 0.11 -0.6
303,146 + +5.3
303,146 + Echvi_0293 0.12 +0.5
303,146 + Echvi_0293 0.12 +1.6
303,191 + Echvi_0293 0.18 -0.2
303,461 + Echvi_0293 0.59 +2.4
303,465 + Echvi_0293 0.59 +1.3
303,713 + +0.2

Or see this region's nucleotide sequence