Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0158

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0156 and Echvi_0157 overlap by 8 nucleotidesEchvi_0157 and Echvi_0158 are separated by 2 nucleotidesEchvi_0158 and Echvi_0159 are separated by 457 nucleotides Echvi_0156: Echvi_0156 - Sugar kinases, ribokinase family, at 158,001 to 158,945 _0156 Echvi_0157: Echvi_0157 - hexose kinase, 1-phosphofructokinase family, at 158,938 to 159,861 _0157 Echvi_0158: Echvi_0158 - Predicted phosphosugar isomerases, at 159,864 to 161,036 _0158 Echvi_0159: Echvi_0159 - Cellulase M and related proteins, at 161,494 to 162,561 _0159 Position (kb) 159 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 158.965 kb on + strandat 158.966 kb on - strandat 158.998 kb on - strandat 158.999 kb on + strandat 159.001 kb on + strandat 159.001 kb on + strandat 159.001 kb on + strandat 159.077 kb on + strand, within Echvi_0157at 159.100 kb on + strand, within Echvi_0157at 159.360 kb on + strand, within Echvi_0157at 159.556 kb on - strand, within Echvi_0157at 159.591 kb on - strand, within Echvi_0157at 159.613 kb on + strand, within Echvi_0157at 159.705 kb on + strand, within Echvi_0157at 159.821 kb on + strandat 159.821 kb on + strandat 159.821 kb on + strandat 159.821 kb on + strandat 159.825 kb on + strandat 159.826 kb on - strandat 159.826 kb on - strandat 159.826 kb on - strandat 159.826 kb on - strandat 159.826 kb on - strandat 159.829 kb on + strandat 159.829 kb on + strandat 159.829 kb on + strandat 159.875 kb on + strandat 159.875 kb on + strandat 159.877 kb on + strandat 159.878 kb on - strandat 159.878 kb on - strandat 159.959 kb on + strandat 159.959 kb on + strandat 159.960 kb on - strandat 159.961 kb on + strandat 159.961 kb on + strandat 160.025 kb on + strand, within Echvi_0158at 160.025 kb on + strand, within Echvi_0158at 160.029 kb on + strand, within Echvi_0158at 160.029 kb on + strand, within Echvi_0158at 160.047 kb on + strand, within Echvi_0158at 160.095 kb on + strand, within Echvi_0158at 160.095 kb on + strand, within Echvi_0158at 160.096 kb on - strand, within Echvi_0158at 160.281 kb on + strand, within Echvi_0158at 160.487 kb on + strand, within Echvi_0158at 160.487 kb on + strand, within Echvi_0158at 160.599 kb on - strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.612 kb on - strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.673 kb on + strand, within Echvi_0158at 160.673 kb on + strand, within Echvi_0158at 160.674 kb on - strand, within Echvi_0158at 160.754 kb on + strand, within Echvi_0158at 160.754 kb on + strand, within Echvi_0158at 160.821 kb on - strand, within Echvi_0158at 160.877 kb on + strand, within Echvi_0158at 160.878 kb on - strand, within Echvi_0158at 160.959 kb on + strandat 160.960 kb on - strandat 160.960 kb on - strandat 161.031 kb on + strandat 161.032 kb on - strandat 161.042 kb on - strandat 161.053 kb on + strandat 161.243 kb on + strandat 161.255 kb on + strandat 161.255 kb on + strandat 161.255 kb on + strandat 161.255 kb on + strandat 161.319 kb on + strandat 161.320 kb on - strandat 161.438 kb on - strandat 161.466 kb on + strandat 161.466 kb on + strandat 161.504 kb on + strandat 161.504 kb on + strandat 161.504 kb on + strandat 161.508 kb on + strandat 161.565 kb on + strandat 161.568 kb on + strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.601 kb on + strand, within Echvi_0159at 161.601 kb on + strand, within Echvi_0159at 161.601 kb on + strand, within Echvi_0159at 161.601 kb on + strand, within Echvi_0159at 161.601 kb on + strand, within Echvi_0159at 161.602 kb on - strand, within Echvi_0159at 161.607 kb on + strand, within Echvi_0159at 161.607 kb on + strand, within Echvi_0159at 161.607 kb on + strand, within Echvi_0159at 161.608 kb on - strand, within Echvi_0159at 161.608 kb on - strand, within Echvi_0159at 161.609 kb on + strand, within Echvi_0159at 161.610 kb on - strand, within Echvi_0159at 161.610 kb on - strand, within Echvi_0159at 161.685 kb on + strand, within Echvi_0159at 161.780 kb on + strand, within Echvi_0159at 161.781 kb on - strand, within Echvi_0159at 161.781 kb on - strand, within Echvi_0159at 161.830 kb on - strand, within Echvi_0159at 161.834 kb on + strand, within Echvi_0159at 161.834 kb on + strand, within Echvi_0159at 161.835 kb on - strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 162.015 kb on + strand, within Echvi_0159at 162.015 kb on - strand, within Echvi_0159at 162.016 kb on - strand, within Echvi_0159at 162.016 kb on - strand, within Echvi_0159at 162.017 kb on + strand, within Echvi_0159at 162.017 kb on + strand, within Echvi_0159at 162.018 kb on - strand, within Echvi_0159

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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158,965 + -1.5
158,966 - -0.2
158,998 - -1.1
158,999 + -0.2
159,001 + +0.5
159,001 + -0.2
159,001 + +0.3
159,077 + Echvi_0157 0.15 +1.4
159,100 + Echvi_0157 0.18 +0.4
159,360 + Echvi_0157 0.46 -1.1
159,556 - Echvi_0157 0.67 +0.9
159,591 - Echvi_0157 0.71 -1.3
159,613 + Echvi_0157 0.73 -0.4
159,705 + Echvi_0157 0.83 -0.4
159,821 + -0.7
159,821 + -0.5
159,821 + +1.2
159,821 + +1.7
159,825 + +0.3
159,826 - -0.5
159,826 - +0.0
159,826 - -0.8
159,826 - -0.8
159,826 - +0.3
159,829 + +0.8
159,829 + +0.1
159,829 + +0.2
159,875 + -1.8
159,875 + -0.4
159,877 + -1.1
159,878 - +0.5
159,878 - -1.8
159,959 + -0.2
159,959 + -1.4
159,960 - +1.5
159,961 + +0.8
159,961 + -2.4
160,025 + Echvi_0158 0.14 +1.5
160,025 + Echvi_0158 0.14 -0.8
160,029 + Echvi_0158 0.14 -2.5
160,029 + Echvi_0158 0.14 -2.6
160,047 + Echvi_0158 0.16 -1.1
160,095 + Echvi_0158 0.20 -1.8
160,095 + Echvi_0158 0.20 -0.2
160,096 - Echvi_0158 0.20 +2.1
160,281 + Echvi_0158 0.36 -0.9
160,487 + Echvi_0158 0.53 -1.2
160,487 + Echvi_0158 0.53 -2.1
160,599 - Echvi_0158 0.63 -1.5
160,611 + Echvi_0158 0.64 -0.4
160,611 + Echvi_0158 0.64 -0.2
160,611 + Echvi_0158 0.64 -1.8
160,611 + Echvi_0158 0.64 -1.6
160,612 - Echvi_0158 0.64 +0.3
160,620 + Echvi_0158 0.64 -0.9
160,620 + Echvi_0158 0.64 -1.0
160,620 + Echvi_0158 0.64 -1.9
160,620 + Echvi_0158 0.64 -2.1
160,673 + Echvi_0158 0.69 -2.2
160,673 + Echvi_0158 0.69 -1.1
160,674 - Echvi_0158 0.69 +0.2
160,754 + Echvi_0158 0.76 -0.0
160,754 + Echvi_0158 0.76 -0.8
160,821 - Echvi_0158 0.82 +0.5
160,877 + Echvi_0158 0.86 -0.3
160,878 - Echvi_0158 0.86 +0.9
160,959 + -3.2
160,960 - +0.2
160,960 - +1.3
161,031 + +0.1
161,032 - +2.3
161,042 - +1.0
161,053 + -1.4
161,243 + -0.2
161,255 + -0.9
161,255 + -1.8
161,255 + +0.5
161,255 + +2.8
161,319 + +0.1
161,320 - +4.1
161,438 - +0.5
161,466 + +0.2
161,466 + +0.0
161,504 + +0.6
161,504 + -0.3
161,504 + +0.3
161,508 + -0.2
161,565 + -1.1
161,568 + +0.6
161,569 - +1.5
161,569 - +0.6
161,569 - -0.2
161,569 - +0.1
161,601 + Echvi_0159 0.10 +0.9
161,601 + Echvi_0159 0.10 -0.2
161,601 + Echvi_0159 0.10 -1.8
161,601 + Echvi_0159 0.10 -0.5
161,601 + Echvi_0159 0.10 +0.7
161,602 - Echvi_0159 0.10 +1.0
161,607 + Echvi_0159 0.11 -0.6
161,607 + Echvi_0159 0.11 +0.8
161,607 + Echvi_0159 0.11 +0.6
161,608 - Echvi_0159 0.11 -0.1
161,608 - Echvi_0159 0.11 +1.7
161,609 + Echvi_0159 0.11 -0.2
161,610 - Echvi_0159 0.11 -0.4
161,610 - Echvi_0159 0.11 -0.0
161,685 + Echvi_0159 0.18 +0.4
161,780 + Echvi_0159 0.27 +0.2
161,781 - Echvi_0159 0.27 +0.1
161,781 - Echvi_0159 0.27 +1.2
161,830 - Echvi_0159 0.31 -0.3
161,834 + Echvi_0159 0.32 +2.1
161,834 + Echvi_0159 0.32 -0.9
161,835 - Echvi_0159 0.32 -3.0
161,954 + Echvi_0159 0.43 -0.5
161,954 + Echvi_0159 0.43 -2.3
161,954 + Echvi_0159 0.43 +0.6
161,955 - Echvi_0159 0.43 +0.1
161,955 - Echvi_0159 0.43 +0.2
161,955 - Echvi_0159 0.43 +0.6
161,955 - Echvi_0159 0.43 +1.6
162,015 + Echvi_0159 0.49 -0.2
162,015 - Echvi_0159 0.49 -0.8
162,016 - Echvi_0159 0.49 +0.6
162,016 - Echvi_0159 0.49 +0.1
162,017 + Echvi_0159 0.49 -0.2
162,017 + Echvi_0159 0.49 -0.6
162,018 - Echvi_0159 0.49 -0.5

Or see this region's nucleotide sequence