Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0082 and Echvi_0083 overlap by 4 nucleotides Echvi_0083 and Echvi_0084 are separated by 7 nucleotides Echvi_0084 and Echvi_0085 are separated by 11 nucleotides Echvi_0085 and Echvi_0086 are separated by 49 nucleotides
Echvi_0082: Echvi_0082 - Glycosyltransferases, probably involved in cell wall biogenesis, at 82,822 to 83,925
_0082
Echvi_0083: Echvi_0083 - Predicted xylanase/chitin deacetylase, at 83,922 to 84,548
_0083
Echvi_0084: Echvi_0084 - Serine phosphatase RsbU, regulator of sigma subunit, at 84,556 to 85,767
_0084
Echvi_0085: Echvi_0085 - hypothetical protein, at 85,779 to 86,030
_0085
Echvi_0086: Echvi_0086 - Glycosyltransferases, probably involved in cell wall biogenesis, at 86,080 to 87,198
_0086
Position (kb)
84
85
86 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 83.597 kb on + strand, within Echvi_0082 at 83.597 kb on + strand, within Echvi_0082 at 83.698 kb on + strand, within Echvi_0082 at 83.699 kb on - strand, within Echvi_0082 at 83.699 kb on - strand, within Echvi_0082 at 83.721 kb on - strand, within Echvi_0082 at 83.765 kb on - strand, within Echvi_0082 at 83.785 kb on + strand, within Echvi_0082 at 83.861 kb on + strand at 83.918 kb on - strand at 83.925 kb on + strand at 83.926 kb on - strand at 83.926 kb on - strand at 83.992 kb on - strand, within Echvi_0083 at 84.025 kb on - strand, within Echvi_0083 at 84.095 kb on - strand, within Echvi_0083 at 84.175 kb on + strand, within Echvi_0083 at 84.199 kb on + strand, within Echvi_0083 at 84.230 kb on + strand, within Echvi_0083 at 84.230 kb on + strand, within Echvi_0083 at 84.292 kb on + strand, within Echvi_0083 at 84.293 kb on - strand, within Echvi_0083 at 84.293 kb on - strand, within Echvi_0083 at 84.293 kb on - strand, within Echvi_0083 at 84.293 kb on - strand, within Echvi_0083 at 84.296 kb on + strand, within Echvi_0083 at 84.296 kb on + strand, within Echvi_0083 at 84.296 kb on + strand, within Echvi_0083 at 84.296 kb on + strand, within Echvi_0083 at 84.296 kb on + strand, within Echvi_0083 at 84.297 kb on - strand, within Echvi_0083 at 84.363 kb on - strand, within Echvi_0083 at 84.391 kb on - strand, within Echvi_0083 at 84.463 kb on + strand, within Echvi_0083 at 84.467 kb on + strand, within Echvi_0083 at 84.467 kb on + strand, within Echvi_0083 at 84.467 kb on + strand, within Echvi_0083 at 84.468 kb on - strand, within Echvi_0083 at 84.468 kb on - strand, within Echvi_0083 at 84.470 kb on + strand, within Echvi_0083 at 84.471 kb on - strand, within Echvi_0083 at 84.548 kb on + strand at 84.548 kb on + strand at 84.548 kb on + strand at 84.548 kb on + strand at 84.548 kb on + strand at 84.548 kb on + strand at 84.548 kb on + strand at 84.549 kb on - strand at 84.549 kb on - strand at 84.552 kb on + strand at 84.552 kb on + strand at 84.553 kb on - strand at 84.553 kb on - strand at 84.553 kb on - strand at 84.553 kb on - strand at 84.574 kb on + strand at 84.575 kb on - strand at 84.577 kb on + strand at 84.578 kb on - strand at 84.738 kb on + strand, within Echvi_0084 at 84.739 kb on - strand, within Echvi_0084 at 84.794 kb on - strand at 84.831 kb on + strand, within Echvi_0084 at 84.835 kb on - strand, within Echvi_0084 at 84.911 kb on + strand, within Echvi_0084 at 84.932 kb on + strand, within Echvi_0084 at 84.933 kb on - strand, within Echvi_0084 at 84.936 kb on + strand, within Echvi_0084 at 84.937 kb on - strand, within Echvi_0084 at 84.938 kb on + strand, within Echvi_0084 at 84.938 kb on + strand, within Echvi_0084 at 84.938 kb on + strand, within Echvi_0084 at 84.938 kb on + strand, within Echvi_0084 at 84.939 kb on - strand, within Echvi_0084 at 84.939 kb on - strand, within Echvi_0084 at 84.960 kb on + strand, within Echvi_0084 at 84.995 kb on + strand, within Echvi_0084 at 84.995 kb on + strand, within Echvi_0084 at 84.995 kb on + strand, within Echvi_0084 at 85.052 kb on - strand, within Echvi_0084 at 85.052 kb on - strand, within Echvi_0084 at 85.158 kb on - strand, within Echvi_0084 at 85.176 kb on + strand, within Echvi_0084 at 85.176 kb on + strand, within Echvi_0084 at 85.176 kb on + strand, within Echvi_0084 at 85.179 kb on + strand, within Echvi_0084 at 85.245 kb on + strand, within Echvi_0084 at 85.245 kb on + strand, within Echvi_0084 at 85.246 kb on - strand, within Echvi_0084 at 85.246 kb on - strand, within Echvi_0084 at 85.246 kb on - strand, within Echvi_0084 at 85.246 kb on - strand, within Echvi_0084 at 85.253 kb on - strand, within Echvi_0084 at 85.298 kb on - strand, within Echvi_0084 at 85.344 kb on + strand, within Echvi_0084 at 85.376 kb on - strand, within Echvi_0084 at 85.408 kb on + strand, within Echvi_0084 at 85.408 kb on + strand, within Echvi_0084 at 85.408 kb on + strand, within Echvi_0084 at 85.426 kb on - strand, within Echvi_0084 at 85.426 kb on - strand, within Echvi_0084 at 85.432 kb on - strand, within Echvi_0084 at 85.448 kb on + strand, within Echvi_0084 at 85.452 kb on + strand, within Echvi_0084 at 85.453 kb on - strand, within Echvi_0084 at 85.473 kb on - strand, within Echvi_0084 at 85.494 kb on + strand, within Echvi_0084 at 85.607 kb on + strand, within Echvi_0084 at 85.608 kb on - strand, within Echvi_0084 at 85.626 kb on + strand, within Echvi_0084 at 85.627 kb on - strand, within Echvi_0084 at 85.647 kb on + strand at 85.660 kb on - strand at 85.729 kb on + strand at 85.730 kb on - strand at 85.787 kb on + strand at 85.787 kb on + strand at 85.788 kb on - strand at 85.828 kb on + strand, within Echvi_0085 at 85.828 kb on + strand, within Echvi_0085 at 85.829 kb on - strand, within Echvi_0085 at 85.835 kb on + strand, within Echvi_0085 at 85.835 kb on + strand, within Echvi_0085 at 85.836 kb on - strand, within Echvi_0085 at 85.836 kb on - strand, within Echvi_0085 at 85.968 kb on + strand, within Echvi_0085 at 85.969 kb on - strand, within Echvi_0085 at 86.074 kb on + strand at 86.191 kb on + strand at 86.192 kb on - strand, within Echvi_0086 at 86.199 kb on - strand, within Echvi_0086 at 86.202 kb on + strand, within Echvi_0086 at 86.202 kb on + strand, within Echvi_0086 at 86.202 kb on + strand, within Echvi_0086 at 86.203 kb on - strand, within Echvi_0086 at 86.203 kb on - strand, within Echvi_0086 at 86.203 kb on - strand, within Echvi_0086 at 86.205 kb on + strand, within Echvi_0086 at 86.205 kb on + strand, within Echvi_0086 at 86.205 kb on + strand, within Echvi_0086 at 86.229 kb on - strand, within Echvi_0086 at 86.236 kb on + strand, within Echvi_0086 at 86.239 kb on + strand, within Echvi_0086 at 86.245 kb on + strand, within Echvi_0086 at 86.256 kb on - strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.279 kb on - strand, within Echvi_0086 at 86.338 kb on + strand, within Echvi_0086 at 86.471 kb on + strand, within Echvi_0086 at 86.515 kb on + strand, within Echvi_0086 at 86.519 kb on + strand, within Echvi_0086 at 86.519 kb on + strand, within Echvi_0086 at 86.520 kb on - strand, within Echvi_0086 at 86.520 kb on - strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.569 kb on - strand, within Echvi_0086 at 86.632 kb on - strand, within Echvi_0086
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 83,597 + Echvi_0082 0.70 -0.8 83,597 + Echvi_0082 0.70 -0.7 83,698 + Echvi_0082 0.79 -0.4 83,699 - Echvi_0082 0.79 -0.9 83,699 - Echvi_0082 0.79 -0.5 83,721 - Echvi_0082 0.81 +1.0 83,765 - Echvi_0082 0.85 +0.4 83,785 + Echvi_0082 0.87 +0.5 83,861 + -0.6 83,918 - -0.0 83,925 + -0.1 83,926 - +1.3 83,926 - -0.2 83,992 - Echvi_0083 0.11 -0.2 84,025 - Echvi_0083 0.16 -0.7 84,095 - Echvi_0083 0.28 -1.7 84,175 + Echvi_0083 0.40 -1.7 84,199 + Echvi_0083 0.44 -0.5 84,230 + Echvi_0083 0.49 -1.9 84,230 + Echvi_0083 0.49 +0.4 84,292 + Echvi_0083 0.59 -1.6 84,293 - Echvi_0083 0.59 -0.6 84,293 - Echvi_0083 0.59 -0.4 84,293 - Echvi_0083 0.59 +0.9 84,293 - Echvi_0083 0.59 -0.2 84,296 + Echvi_0083 0.60 -0.8 84,296 + Echvi_0083 0.60 +1.8 84,296 + Echvi_0083 0.60 -1.0 84,296 + Echvi_0083 0.60 -0.4 84,296 + Echvi_0083 0.60 +0.5 84,297 - Echvi_0083 0.60 -1.2 84,363 - Echvi_0083 0.70 -0.2 84,391 - Echvi_0083 0.75 -0.1 84,463 + Echvi_0083 0.86 -0.1 84,467 + Echvi_0083 0.87 -1.1 84,467 + Echvi_0083 0.87 -2.4 84,467 + Echvi_0083 0.87 +1.0 84,468 - Echvi_0083 0.87 -0.9 84,468 - Echvi_0083 0.87 -1.1 84,470 + Echvi_0083 0.87 -1.3 84,471 - Echvi_0083 0.88 -0.8 84,548 + +0.1 84,548 + +1.9 84,548 + -0.8 84,548 + -0.1 84,548 + -1.0 84,548 + -0.1 84,548 + -0.4 84,549 - -0.9 84,549 - +1.2 84,552 + -0.4 84,552 + -0.7 84,553 - +0.5 84,553 - +0.2 84,553 - -0.4 84,553 - +1.6 84,574 + -0.8 84,575 - -1.5 84,577 + -2.1 84,578 - -0.9 84,738 + Echvi_0084 0.15 -0.5 84,739 - Echvi_0084 0.15 -0.9 84,794 - +1.1 84,831 + Echvi_0084 0.23 -0.5 84,835 - Echvi_0084 0.23 -0.7 84,911 + Echvi_0084 0.29 -1.2 84,932 + Echvi_0084 0.31 -3.5 84,933 - Echvi_0084 0.31 +0.2 84,936 + Echvi_0084 0.31 +2.1 84,937 - Echvi_0084 0.31 -0.2 84,938 + Echvi_0084 0.32 +0.1 84,938 + Echvi_0084 0.32 -0.9 84,938 + Echvi_0084 0.32 -1.3 84,938 + Echvi_0084 0.32 -0.5 84,939 - Echvi_0084 0.32 -1.9 84,939 - Echvi_0084 0.32 -0.1 84,960 + Echvi_0084 0.33 -1.2 84,995 + Echvi_0084 0.36 +0.5 84,995 + Echvi_0084 0.36 -0.7 84,995 + Echvi_0084 0.36 -0.9 85,052 - Echvi_0084 0.41 -2.2 85,052 - Echvi_0084 0.41 -0.7 85,158 - Echvi_0084 0.50 -0.8 85,176 + Echvi_0084 0.51 -0.5 85,176 + Echvi_0084 0.51 -0.5 85,176 + Echvi_0084 0.51 +1.1 85,179 + Echvi_0084 0.51 -1.4 85,245 + Echvi_0084 0.57 -0.3 85,245 + Echvi_0084 0.57 +3.1 85,246 - Echvi_0084 0.57 -0.4 85,246 - Echvi_0084 0.57 -1.2 85,246 - Echvi_0084 0.57 -1.2 85,246 - Echvi_0084 0.57 +0.1 85,253 - Echvi_0084 0.58 -0.8 85,298 - Echvi_0084 0.61 +1.1 85,344 + Echvi_0084 0.65 -2.0 85,376 - Echvi_0084 0.68 -0.8 85,408 + Echvi_0084 0.70 -0.9 85,408 + Echvi_0084 0.70 -2.1 85,408 + Echvi_0084 0.70 -1.3 85,426 - Echvi_0084 0.72 +0.3 85,426 - Echvi_0084 0.72 -1.2 85,432 - Echvi_0084 0.72 -1.7 85,448 + Echvi_0084 0.74 -1.8 85,452 + Echvi_0084 0.74 -1.2 85,453 - Echvi_0084 0.74 +1.1 85,473 - Echvi_0084 0.76 +0.6 85,494 + Echvi_0084 0.77 -0.9 85,607 + Echvi_0084 0.87 -1.4 85,608 - Echvi_0084 0.87 -0.8 85,626 + Echvi_0084 0.88 +0.5 85,627 - Echvi_0084 0.88 -1.1 85,647 + -1.1 85,660 - -0.0 85,729 + -1.7 85,730 - -0.6 85,787 + -0.1 85,787 + -0.4 85,788 - +0.8 85,828 + Echvi_0085 0.19 +0.8 85,828 + Echvi_0085 0.19 +0.5 85,829 - Echvi_0085 0.20 -0.6 85,835 + Echvi_0085 0.22 +0.1 85,835 + Echvi_0085 0.22 -0.7 85,836 - Echvi_0085 0.23 +0.2 85,836 - Echvi_0085 0.23 -0.2 85,968 + Echvi_0085 0.75 -0.6 85,969 - Echvi_0085 0.75 -0.6 86,074 + +0.1 86,191 + -0.8 86,192 - Echvi_0086 0.10 -1.0 86,199 - Echvi_0086 0.11 +1.1 86,202 + Echvi_0086 0.11 +1.0 86,202 + Echvi_0086 0.11 +0.5 86,202 + Echvi_0086 0.11 -3.4 86,203 - Echvi_0086 0.11 +0.4 86,203 - Echvi_0086 0.11 +0.9 86,203 - Echvi_0086 0.11 +1.5 86,205 + Echvi_0086 0.11 -0.4 86,205 + Echvi_0086 0.11 +0.1 86,205 + Echvi_0086 0.11 -1.3 86,229 - Echvi_0086 0.13 +0.5 86,236 + Echvi_0086 0.14 +2.1 86,239 + Echvi_0086 0.14 +0.7 86,245 + Echvi_0086 0.15 +2.1 86,256 - Echvi_0086 0.16 +1.3 86,257 + Echvi_0086 0.16 -2.5 86,257 + Echvi_0086 0.16 +0.8 86,257 + Echvi_0086 0.16 -0.8 86,258 - Echvi_0086 0.16 +0.0 86,258 - Echvi_0086 0.16 +1.2 86,258 - Echvi_0086 0.16 -0.1 86,279 - Echvi_0086 0.18 +2.4 86,338 + Echvi_0086 0.23 +0.1 86,471 + Echvi_0086 0.35 -1.8 86,515 + Echvi_0086 0.39 +0.3 86,519 + Echvi_0086 0.39 +1.1 86,519 + Echvi_0086 0.39 +1.4 86,520 - Echvi_0086 0.39 -0.0 86,520 - Echvi_0086 0.39 +0.5 86,566 + Echvi_0086 0.43 +0.1 86,566 + Echvi_0086 0.43 -0.7 86,566 + Echvi_0086 0.43 +1.4 86,567 - Echvi_0086 0.44 +0.9 86,567 - Echvi_0086 0.44 +1.4 86,567 - Echvi_0086 0.44 -0.2 86,567 - Echvi_0086 0.44 -0.3 86,567 - Echvi_0086 0.44 +1.7 86,567 - Echvi_0086 0.44 -0.0 86,567 - Echvi_0086 0.44 +0.9 86,569 - Echvi_0086 0.44 +0.4 86,632 - Echvi_0086 0.49 +0.4
Or see this region's nucleotide sequence