Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0073

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0072 and Echvi_0073 are separated by 59 nucleotidesEchvi_0073 and Echvi_0074 are separated by 10 nucleotides Echvi_0072: Echvi_0072 - asparaginyl-tRNA synthetase, at 73,346 to 74,797 _0072 Echvi_0073: Echvi_0073 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 74,857 to 76,368 _0073 Echvi_0074: Echvi_0074 - Permeases of the major facilitator superfamily, at 76,379 to 77,677 _0074 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2 3at 74.795 kb on + strandat 74.796 kb on - strandat 74.802 kb on + strandat 74.802 kb on + strandat 74.802 kb on + strandat 74.803 kb on - strandat 74.803 kb on - strandat 74.803 kb on - strandat 74.803 kb on - strandat 74.803 kb on - strandat 74.803 kb on - strandat 74.803 kb on - strandat 74.803 kb on - strandat 74.805 kb on + strandat 74.806 kb on - strandat 74.806 kb on - strandat 74.806 kb on - strandat 74.806 kb on - strandat 74.806 kb on - strandat 74.807 kb on + strandat 74.807 kb on + strandat 74.971 kb on + strandat 75.003 kb on - strandat 75.066 kb on + strand, within Echvi_0073at 75.067 kb on - strand, within Echvi_0073at 75.118 kb on - strand, within Echvi_0073at 75.123 kb on + strand, within Echvi_0073at 75.123 kb on + strand, within Echvi_0073at 75.124 kb on - strand, within Echvi_0073at 75.196 kb on - strand, within Echvi_0073at 75.196 kb on - strand, within Echvi_0073at 75.237 kb on + strand, within Echvi_0073at 75.262 kb on - strand, within Echvi_0073at 75.270 kb on - strand, within Echvi_0073at 75.298 kb on + strand, within Echvi_0073at 75.298 kb on + strand, within Echvi_0073at 75.299 kb on - strand, within Echvi_0073at 75.306 kb on + strand, within Echvi_0073at 75.339 kb on - strand, within Echvi_0073at 75.432 kb on + strand, within Echvi_0073at 75.508 kb on + strand, within Echvi_0073at 75.508 kb on + strand, within Echvi_0073at 75.509 kb on - strand, within Echvi_0073at 75.595 kb on + strand, within Echvi_0073at 75.595 kb on + strand, within Echvi_0073at 75.595 kb on + strand, within Echvi_0073at 75.605 kb on + strand, within Echvi_0073at 75.667 kb on - strand, within Echvi_0073at 75.702 kb on - strand, within Echvi_0073at 75.708 kb on + strand, within Echvi_0073at 75.708 kb on + strand, within Echvi_0073at 75.709 kb on - strand, within Echvi_0073at 75.776 kb on + strand, within Echvi_0073at 75.832 kb on - strand, within Echvi_0073at 75.844 kb on + strand, within Echvi_0073at 75.906 kb on + strand, within Echvi_0073at 75.916 kb on - strand, within Echvi_0073at 75.980 kb on - strand, within Echvi_0073at 75.997 kb on + strand, within Echvi_0073at 75.998 kb on - strand, within Echvi_0073at 76.092 kb on + strand, within Echvi_0073at 76.093 kb on - strand, within Echvi_0073at 76.137 kb on + strand, within Echvi_0073at 76.138 kb on - strand, within Echvi_0073at 76.138 kb on - strand, within Echvi_0073at 76.163 kb on - strand, within Echvi_0073at 76.213 kb on + strand, within Echvi_0073at 76.213 kb on + strand, within Echvi_0073at 76.363 kb on + strandat 76.376 kb on - strandat 76.388 kb on + strandat 76.397 kb on - strandat 76.397 kb on - strandat 76.428 kb on - strandat 76.428 kb on - strandat 76.432 kb on + strandat 76.432 kb on + strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.468 kb on + strandat 76.468 kb on + strandat 76.477 kb on + strandat 76.543 kb on + strand, within Echvi_0074at 76.551 kb on + strand, within Echvi_0074at 76.558 kb on + strand, within Echvi_0074at 76.564 kb on - strand, within Echvi_0074at 76.695 kb on + strand, within Echvi_0074at 76.737 kb on - strand, within Echvi_0074at 76.798 kb on + strand, within Echvi_0074at 76.806 kb on - strand, within Echvi_0074at 76.806 kb on - strand, within Echvi_0074at 76.806 kb on - strand, within Echvi_0074at 76.811 kb on + strand, within Echvi_0074at 76.811 kb on + strand, within Echvi_0074at 76.812 kb on - strand, within Echvi_0074at 76.812 kb on - strand, within Echvi_0074at 76.812 kb on - strand, within Echvi_0074at 76.832 kb on + strand, within Echvi_0074at 76.832 kb on + strand, within Echvi_0074at 76.833 kb on - strand, within Echvi_0074at 76.837 kb on + strand, within Echvi_0074at 76.853 kb on + strand, within Echvi_0074at 76.854 kb on - strand, within Echvi_0074at 76.884 kb on + strand, within Echvi_0074at 76.884 kb on + strand, within Echvi_0074at 76.884 kb on + strand, within Echvi_0074at 76.884 kb on + strand, within Echvi_0074at 76.885 kb on - strand, within Echvi_0074at 76.888 kb on + strand, within Echvi_0074at 76.888 kb on + strand, within Echvi_0074at 76.889 kb on - strand, within Echvi_0074at 76.987 kb on + strand, within Echvi_0074at 76.989 kb on + strand, within Echvi_0074at 76.989 kb on + strand, within Echvi_0074at 76.990 kb on - strand, within Echvi_0074at 76.990 kb on - strand, within Echvi_0074at 77.003 kb on + strand, within Echvi_0074at 77.003 kb on + strand, within Echvi_0074at 77.003 kb on + strand, within Echvi_0074at 77.004 kb on - strand, within Echvi_0074at 77.033 kb on - strand, within Echvi_0074at 77.033 kb on - strand, within Echvi_0074at 77.043 kb on - strand, within Echvi_0074at 77.047 kb on - strand, within Echvi_0074at 77.047 kb on - strand, within Echvi_0074at 77.129 kb on + strand, within Echvi_0074at 77.194 kb on + strand, within Echvi_0074at 77.196 kb on + strand, within Echvi_0074at 77.285 kb on - strand, within Echvi_0074at 77.292 kb on + strand, within Echvi_0074at 77.292 kb on + strand, within Echvi_0074at 77.293 kb on - strand, within Echvi_0074at 77.293 kb on - strand, within Echvi_0074at 77.297 kb on + strand, within Echvi_0074at 77.339 kb on - strand, within Echvi_0074at 77.366 kb on - strand, within Echvi_0074

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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74,795 + +0.7
74,796 - -0.7
74,802 + +0.6
74,802 + -0.9
74,802 + -1.0
74,803 - -0.3
74,803 - -1.0
74,803 - -1.4
74,803 - -0.3
74,803 - +0.0
74,803 - +0.7
74,803 - +0.0
74,803 - +0.3
74,805 + -0.6
74,806 - -0.3
74,806 - -0.5
74,806 - +1.0
74,806 - +0.7
74,806 - +0.6
74,807 + +0.8
74,807 + +1.2
74,971 + -0.0
75,003 - -0.9
75,066 + Echvi_0073 0.14 -1.4
75,067 - Echvi_0073 0.14 -0.7
75,118 - Echvi_0073 0.17 +0.6
75,123 + Echvi_0073 0.18 -1.1
75,123 + Echvi_0073 0.18 -0.7
75,124 - Echvi_0073 0.18 -0.1
75,196 - Echvi_0073 0.22 +0.1
75,196 - Echvi_0073 0.22 -0.2
75,237 + Echvi_0073 0.25 -0.7
75,262 - Echvi_0073 0.27 -0.4
75,270 - Echvi_0073 0.27 +1.3
75,298 + Echvi_0073 0.29 -0.6
75,298 + Echvi_0073 0.29 +1.0
75,299 - Echvi_0073 0.29 -0.9
75,306 + Echvi_0073 0.30 +0.3
75,339 - Echvi_0073 0.32 +0.3
75,432 + Echvi_0073 0.38 -0.4
75,508 + Echvi_0073 0.43 -0.8
75,508 + Echvi_0073 0.43 -0.0
75,509 - Echvi_0073 0.43 -1.2
75,595 + Echvi_0073 0.49 -0.9
75,595 + Echvi_0073 0.49 +1.5
75,595 + Echvi_0073 0.49 -0.1
75,605 + Echvi_0073 0.49 -0.5
75,667 - Echvi_0073 0.54 -0.7
75,702 - Echvi_0073 0.56 -0.1
75,708 + Echvi_0073 0.56 +0.0
75,708 + Echvi_0073 0.56 -1.0
75,709 - Echvi_0073 0.56 -0.3
75,776 + Echvi_0073 0.61 -0.3
75,832 - Echvi_0073 0.64 -0.1
75,844 + Echvi_0073 0.65 -0.2
75,906 + Echvi_0073 0.69 +0.1
75,916 - Echvi_0073 0.70 -0.5
75,980 - Echvi_0073 0.74 -0.2
75,997 + Echvi_0073 0.75 -0.4
75,998 - Echvi_0073 0.75 -1.2
76,092 + Echvi_0073 0.82 -1.0
76,093 - Echvi_0073 0.82 +0.3
76,137 + Echvi_0073 0.85 -1.1
76,138 - Echvi_0073 0.85 +2.1
76,138 - Echvi_0073 0.85 +0.4
76,163 - Echvi_0073 0.86 +0.2
76,213 + Echvi_0073 0.90 +0.5
76,213 + Echvi_0073 0.90 -0.2
76,363 + +0.5
76,376 - +0.1
76,388 + +1.5
76,397 - -1.0
76,397 - +1.6
76,428 - +0.9
76,428 - +0.8
76,432 + -0.4
76,432 + -0.5
76,433 - +0.2
76,433 - -1.6
76,468 + -0.6
76,468 + -0.3
76,477 + +0.3
76,543 + Echvi_0074 0.13 +0.8
76,551 + Echvi_0074 0.13 +1.0
76,558 + Echvi_0074 0.14 +1.3
76,564 - Echvi_0074 0.14 +0.7
76,695 + Echvi_0074 0.24 +0.0
76,737 - Echvi_0074 0.28 +0.5
76,798 + Echvi_0074 0.32 +0.5
76,806 - Echvi_0074 0.33 +0.4
76,806 - Echvi_0074 0.33 -1.2
76,806 - Echvi_0074 0.33 -0.6
76,811 + Echvi_0074 0.33 +0.5
76,811 + Echvi_0074 0.33 -1.5
76,812 - Echvi_0074 0.33 -0.2
76,812 - Echvi_0074 0.33 -1.2
76,812 - Echvi_0074 0.33 +0.6
76,832 + Echvi_0074 0.35 +0.9
76,832 + Echvi_0074 0.35 +2.1
76,833 - Echvi_0074 0.35 +1.2
76,837 + Echvi_0074 0.35 -0.1
76,853 + Echvi_0074 0.36 -0.0
76,854 - Echvi_0074 0.37 -0.9
76,884 + Echvi_0074 0.39 -0.0
76,884 + Echvi_0074 0.39 -1.9
76,884 + Echvi_0074 0.39 +1.2
76,884 + Echvi_0074 0.39 +0.5
76,885 - Echvi_0074 0.39 +0.0
76,888 + Echvi_0074 0.39 -0.1
76,888 + Echvi_0074 0.39 -0.1
76,889 - Echvi_0074 0.39 +0.5
76,987 + Echvi_0074 0.47 +1.3
76,989 + Echvi_0074 0.47 +0.9
76,989 + Echvi_0074 0.47 -0.5
76,990 - Echvi_0074 0.47 -0.2
76,990 - Echvi_0074 0.47 +0.4
77,003 + Echvi_0074 0.48 +1.4
77,003 + Echvi_0074 0.48 +0.7
77,003 + Echvi_0074 0.48 +0.1
77,004 - Echvi_0074 0.48 -0.3
77,033 - Echvi_0074 0.50 -0.2
77,033 - Echvi_0074 0.50 -0.2
77,043 - Echvi_0074 0.51 -0.5
77,047 - Echvi_0074 0.51 -0.5
77,047 - Echvi_0074 0.51 +0.3
77,129 + Echvi_0074 0.58 +1.4
77,194 + Echvi_0074 0.63 +0.9
77,196 + Echvi_0074 0.63 +1.8
77,285 - Echvi_0074 0.70 -0.2
77,292 + Echvi_0074 0.70 +1.0
77,292 + Echvi_0074 0.70 +2.8
77,293 - Echvi_0074 0.70 +1.4
77,293 - Echvi_0074 0.70 +0.2
77,297 + Echvi_0074 0.71 +1.9
77,339 - Echvi_0074 0.74 -0.1
77,366 - Echvi_0074 0.76 +1.0

Or see this region's nucleotide sequence