Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0062 and Echvi_0063 are separated by 263 nucleotides Echvi_0063 and Echvi_0064 are separated by 609 nucleotides Echvi_0064 and Echvi_0065 are separated by 95 nucleotides
Echvi_0062: Echvi_0062 - Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis, at 60,652 to 61,785
_0062
Echvi_0063: Echvi_0063 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 62,049 to 63,203
_0063
Echvi_0064: Echvi_0064 - 5S, at 63,813 to 63,924
_0064
Echvi_0065: Echvi_0065 - 23S, at 64,020 to 66,913
_0065
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 61.053 kb on + strand, within Echvi_0062 at 61.060 kb on + strand, within Echvi_0062 at 61.060 kb on + strand, within Echvi_0062 at 61.060 kb on + strand, within Echvi_0062 at 61.060 kb on + strand, within Echvi_0062 at 61.060 kb on + strand, within Echvi_0062 at 61.060 kb on + strand, within Echvi_0062 at 61.061 kb on - strand, within Echvi_0062 at 61.061 kb on - strand, within Echvi_0062 at 61.061 kb on - strand, within Echvi_0062 at 61.061 kb on - strand, within Echvi_0062 at 61.061 kb on - strand, within Echvi_0062 at 61.061 kb on - strand, within Echvi_0062 at 61.061 kb on - strand, within Echvi_0062 at 61.061 kb on - strand, within Echvi_0062 at 61.064 kb on - strand, within Echvi_0062 at 61.080 kb on + strand, within Echvi_0062 at 61.092 kb on + strand, within Echvi_0062 at 61.092 kb on + strand, within Echvi_0062 at 61.093 kb on - strand, within Echvi_0062 at 61.093 kb on - strand, within Echvi_0062 at 61.093 kb on - strand, within Echvi_0062 at 61.093 kb on - strand, within Echvi_0062 at 61.093 kb on - strand, within Echvi_0062 at 61.093 kb on - strand, within Echvi_0062 at 61.108 kb on - strand, within Echvi_0062 at 61.108 kb on - strand, within Echvi_0062 at 61.116 kb on - strand, within Echvi_0062 at 61.142 kb on - strand, within Echvi_0062 at 61.183 kb on - strand, within Echvi_0062 at 61.238 kb on + strand, within Echvi_0062 at 61.279 kb on + strand, within Echvi_0062 at 61.280 kb on - strand, within Echvi_0062 at 61.329 kb on - strand, within Echvi_0062 at 61.331 kb on + strand, within Echvi_0062 at 61.391 kb on - strand, within Echvi_0062 at 61.500 kb on + strand, within Echvi_0062 at 61.625 kb on + strand, within Echvi_0062 at 61.626 kb on - strand, within Echvi_0062 at 61.635 kb on + strand, within Echvi_0062 at 61.651 kb on - strand, within Echvi_0062 at 61.651 kb on - strand, within Echvi_0062 at 61.651 kb on - strand, within Echvi_0062 at 61.669 kb on + strand, within Echvi_0062 at 61.670 kb on - strand, within Echvi_0062 at 61.685 kb on + strand at 61.685 kb on + strand at 61.686 kb on - strand at 61.686 kb on - strand at 61.812 kb on - strand at 61.815 kb on - strand at 61.815 kb on - strand at 61.937 kb on - strand at 61.955 kb on + strand at 61.955 kb on + strand at 61.956 kb on - strand at 61.998 kb on + strand at 62.030 kb on + strand at 62.032 kb on + strand at 62.050 kb on + strand at 62.060 kb on + strand at 62.075 kb on + strand at 62.075 kb on + strand at 62.076 kb on - strand at 62.111 kb on + strand at 62.111 kb on + strand at 62.111 kb on + strand at 62.136 kb on + strand at 62.196 kb on + strand, within Echvi_0063 at 62.211 kb on + strand, within Echvi_0063 at 62.263 kb on - strand, within Echvi_0063 at 62.292 kb on - strand, within Echvi_0063 at 62.301 kb on + strand, within Echvi_0063 at 62.328 kb on - strand, within Echvi_0063 at 62.328 kb on - strand, within Echvi_0063 at 62.344 kb on - strand, within Echvi_0063 at 62.388 kb on - strand, within Echvi_0063 at 62.412 kb on + strand, within Echvi_0063 at 62.412 kb on + strand, within Echvi_0063 at 62.423 kb on + strand, within Echvi_0063 at 62.423 kb on + strand, within Echvi_0063 at 62.440 kb on - strand, within Echvi_0063 at 62.440 kb on - strand, within Echvi_0063 at 62.463 kb on + strand, within Echvi_0063 at 62.507 kb on + strand, within Echvi_0063 at 62.507 kb on + strand, within Echvi_0063 at 62.508 kb on - strand, within Echvi_0063 at 62.522 kb on + strand, within Echvi_0063 at 62.529 kb on + strand, within Echvi_0063 at 62.529 kb on + strand, within Echvi_0063 at 62.529 kb on + strand, within Echvi_0063 at 62.530 kb on - strand, within Echvi_0063 at 62.530 kb on - strand, within Echvi_0063 at 62.530 kb on - strand, within Echvi_0063 at 62.538 kb on + strand, within Echvi_0063 at 62.538 kb on + strand, within Echvi_0063 at 62.551 kb on - strand, within Echvi_0063 at 62.600 kb on + strand, within Echvi_0063 at 62.601 kb on - strand, within Echvi_0063 at 62.602 kb on + strand, within Echvi_0063 at 62.617 kb on - strand, within Echvi_0063 at 62.654 kb on - strand, within Echvi_0063 at 62.657 kb on + strand, within Echvi_0063 at 62.657 kb on + strand, within Echvi_0063 at 62.657 kb on + strand, within Echvi_0063 at 62.658 kb on - strand, within Echvi_0063 at 62.658 kb on - strand, within Echvi_0063 at 62.658 kb on - strand, within Echvi_0063 at 62.658 kb on - strand, within Echvi_0063 at 62.658 kb on - strand, within Echvi_0063 at 62.660 kb on + strand, within Echvi_0063 at 62.702 kb on + strand, within Echvi_0063 at 62.705 kb on - strand, within Echvi_0063 at 62.708 kb on + strand, within Echvi_0063 at 62.708 kb on + strand, within Echvi_0063 at 62.708 kb on + strand, within Echvi_0063 at 62.708 kb on + strand, within Echvi_0063 at 62.708 kb on + strand, within Echvi_0063 at 62.708 kb on + strand, within Echvi_0063 at 62.709 kb on - strand, within Echvi_0063 at 62.709 kb on - strand, within Echvi_0063 at 62.709 kb on - strand, within Echvi_0063 at 62.709 kb on - strand, within Echvi_0063 at 62.712 kb on + strand, within Echvi_0063 at 62.712 kb on + strand, within Echvi_0063 at 62.713 kb on - strand, within Echvi_0063 at 62.744 kb on + strand, within Echvi_0063 at 62.782 kb on - strand, within Echvi_0063 at 62.818 kb on + strand, within Echvi_0063 at 62.830 kb on - strand, within Echvi_0063 at 62.886 kb on + strand, within Echvi_0063 at 62.887 kb on - strand, within Echvi_0063 at 62.887 kb on - strand, within Echvi_0063 at 62.951 kb on + strand, within Echvi_0063 at 62.960 kb on + strand, within Echvi_0063 at 62.960 kb on + strand, within Echvi_0063 at 62.961 kb on - strand, within Echvi_0063 at 62.961 kb on - strand, within Echvi_0063 at 63.004 kb on + strand, within Echvi_0063 at 63.005 kb on - strand, within Echvi_0063 at 63.030 kb on + strand, within Echvi_0063 at 63.062 kb on + strand, within Echvi_0063 at 63.076 kb on + strand, within Echvi_0063 at 63.111 kb on + strand at 63.150 kb on + strand at 63.153 kb on + strand at 63.154 kb on - strand at 63.154 kb on - strand at 63.155 kb on + strand at 63.155 kb on + strand at 63.156 kb on - strand at 63.156 kb on - strand at 63.156 kb on - strand at 63.156 kb on - strand at 63.189 kb on + strand at 63.189 kb on + strand at 63.195 kb on + strand at 63.198 kb on + strand at 63.198 kb on + strand at 63.198 kb on + strand at 63.198 kb on + strand at 63.198 kb on + strand at 63.198 kb on + strand at 63.199 kb on - strand at 63.220 kb on + strand at 63.227 kb on + strand at 63.466 kb on - strand at 63.517 kb on - strand at 63.517 kb on - strand at 63.579 kb on + strand at 63.580 kb on - strand at 63.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 61,053 + Echvi_0062 0.35 +1.5 61,060 + Echvi_0062 0.36 -1.5 61,060 + Echvi_0062 0.36 +0.5 61,060 + Echvi_0062 0.36 +0.6 61,060 + Echvi_0062 0.36 -0.6 61,060 + Echvi_0062 0.36 +0.1 61,060 + Echvi_0062 0.36 -0.5 61,061 - Echvi_0062 0.36 -0.5 61,061 - Echvi_0062 0.36 -0.4 61,061 - Echvi_0062 0.36 +2.1 61,061 - Echvi_0062 0.36 +0.4 61,061 - Echvi_0062 0.36 -0.7 61,061 - Echvi_0062 0.36 +1.1 61,061 - Echvi_0062 0.36 -1.7 61,061 - Echvi_0062 0.36 +1.1 61,064 - Echvi_0062 0.36 -0.1 61,080 + Echvi_0062 0.38 -1.1 61,092 + Echvi_0062 0.39 +0.0 61,092 + Echvi_0062 0.39 +0.1 61,093 - Echvi_0062 0.39 +2.1 61,093 - Echvi_0062 0.39 -0.1 61,093 - Echvi_0062 0.39 +1.2 61,093 - Echvi_0062 0.39 -0.2 61,093 - Echvi_0062 0.39 +0.5 61,093 - Echvi_0062 0.39 +2.1 61,108 - Echvi_0062 0.40 +0.2 61,108 - Echvi_0062 0.40 -0.7 61,116 - Echvi_0062 0.41 -1.1 61,142 - Echvi_0062 0.43 -0.1 61,183 - Echvi_0062 0.47 -1.1 61,238 + Echvi_0062 0.52 -0.0 61,279 + Echvi_0062 0.55 +0.4 61,280 - Echvi_0062 0.55 -1.4 61,329 - Echvi_0062 0.60 -0.3 61,331 + Echvi_0062 0.60 +2.4 61,391 - Echvi_0062 0.65 -0.6 61,500 + Echvi_0062 0.75 +0.5 61,625 + Echvi_0062 0.86 -1.5 61,626 - Echvi_0062 0.86 -0.6 61,635 + Echvi_0062 0.87 +0.1 61,651 - Echvi_0062 0.88 -0.2 61,651 - Echvi_0062 0.88 +0.5 61,651 - Echvi_0062 0.88 +0.8 61,669 + Echvi_0062 0.90 +0.5 61,670 - Echvi_0062 0.90 -1.9 61,685 + -0.8 61,685 + +0.3 61,686 - +0.9 61,686 - -0.3 61,812 - -0.2 61,815 - -0.6 61,815 - -0.2 61,937 - +0.1 61,955 + +0.1 61,955 + -2.3 61,956 - +0.9 61,998 + -0.1 62,030 + -0.3 62,032 + +0.5 62,050 + -0.4 62,060 + +0.0 62,075 + -0.2 62,075 + -1.6 62,076 - -0.6 62,111 + +0.1 62,111 + -0.1 62,111 + +0.1 62,136 + -1.6 62,196 + Echvi_0063 0.13 -0.5 62,211 + Echvi_0063 0.14 -1.1 62,263 - Echvi_0063 0.19 -0.4 62,292 - Echvi_0063 0.21 -0.7 62,301 + Echvi_0063 0.22 -1.2 62,328 - Echvi_0063 0.24 -1.1 62,328 - Echvi_0063 0.24 -1.8 62,344 - Echvi_0063 0.26 -2.2 62,388 - Echvi_0063 0.29 -0.2 62,412 + Echvi_0063 0.31 -1.1 62,412 + Echvi_0063 0.31 -0.5 62,423 + Echvi_0063 0.32 +0.3 62,423 + Echvi_0063 0.32 -1.4 62,440 - Echvi_0063 0.34 -0.8 62,440 - Echvi_0063 0.34 -1.1 62,463 + Echvi_0063 0.36 -1.7 62,507 + Echvi_0063 0.40 -0.7 62,507 + Echvi_0063 0.40 -1.2 62,508 - Echvi_0063 0.40 -0.7 62,522 + Echvi_0063 0.41 +0.1 62,529 + Echvi_0063 0.42 -1.2 62,529 + Echvi_0063 0.42 -2.2 62,529 + Echvi_0063 0.42 +0.9 62,530 - Echvi_0063 0.42 -1.4 62,530 - Echvi_0063 0.42 -0.8 62,530 - Echvi_0063 0.42 +3.9 62,538 + Echvi_0063 0.42 -0.7 62,538 + Echvi_0063 0.42 +0.5 62,551 - Echvi_0063 0.43 -0.5 62,600 + Echvi_0063 0.48 -2.4 62,601 - Echvi_0063 0.48 -0.9 62,602 + Echvi_0063 0.48 +0.4 62,617 - Echvi_0063 0.49 +0.2 62,654 - Echvi_0063 0.52 +1.4 62,657 + Echvi_0063 0.53 -2.1 62,657 + Echvi_0063 0.53 +0.7 62,657 + Echvi_0063 0.53 -1.4 62,658 - Echvi_0063 0.53 -1.2 62,658 - Echvi_0063 0.53 -0.1 62,658 - Echvi_0063 0.53 -0.9 62,658 - Echvi_0063 0.53 -1.4 62,658 - Echvi_0063 0.53 -2.0 62,660 + Echvi_0063 0.53 +0.1 62,702 + Echvi_0063 0.57 +0.1 62,705 - Echvi_0063 0.57 -1.6 62,708 + Echvi_0063 0.57 -1.7 62,708 + Echvi_0063 0.57 +0.5 62,708 + Echvi_0063 0.57 +0.8 62,708 + Echvi_0063 0.57 -0.9 62,708 + Echvi_0063 0.57 -1.4 62,708 + Echvi_0063 0.57 -0.8 62,709 - Echvi_0063 0.57 -0.9 62,709 - Echvi_0063 0.57 +0.1 62,709 - Echvi_0063 0.57 -0.8 62,709 - Echvi_0063 0.57 -2.6 62,712 + Echvi_0063 0.57 +0.1 62,712 + Echvi_0063 0.57 -0.3 62,713 - Echvi_0063 0.57 -0.2 62,744 + Echvi_0063 0.60 +2.1 62,782 - Echvi_0063 0.63 -0.2 62,818 + Echvi_0063 0.67 -0.1 62,830 - Echvi_0063 0.68 -1.0 62,886 + Echvi_0063 0.72 +0.6 62,887 - Echvi_0063 0.73 -1.2 62,887 - Echvi_0063 0.73 -0.9 62,951 + Echvi_0063 0.78 +0.5 62,960 + Echvi_0063 0.79 -2.2 62,960 + Echvi_0063 0.79 +0.5 62,961 - Echvi_0063 0.79 +2.1 62,961 - Echvi_0063 0.79 -0.5 63,004 + Echvi_0063 0.83 -0.5 63,005 - Echvi_0063 0.83 -0.6 63,030 + Echvi_0063 0.85 -1.9 63,062 + Echvi_0063 0.88 -0.4 63,076 + Echvi_0063 0.89 -1.7 63,111 + -1.1 63,150 + -1.6 63,153 + -1.6 63,154 - -0.7 63,154 - -0.9 63,155 + -1.3 63,155 + -1.4 63,156 - -1.2 63,156 - -0.9 63,156 - -0.7 63,156 - +0.5 63,189 + -0.5 63,189 + -2.4 63,195 + -0.6 63,198 + -0.9 63,198 + +0.1 63,198 + -1.8 63,198 + -2.1 63,198 + +0.1 63,198 + -3.3 63,199 - -1.1 63,220 + -1.5 63,227 + -1.5 63,466 - -0.6 63,517 - -0.4 63,517 - -2.9 63,579 + -0.4 63,580 - +0.3 63,737 - +2.1
Or see this region's nucleotide sequence