Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6046 and Atu6047 are separated by 111 nucleotides Atu6047 and Atu6048 are separated by 180 nucleotides
Atu6046: Atu6046 - DNA invertase, at 56,233 to 57,345
Atu6046
Atu6047: Atu6047 - conserved hypothetical protein, at 57,457 to 58,566
Atu6047
Atu6048: Atu6048 - conserved hypothetical protein, at 58,747 to 61,257
Atu6048
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 56.515 kb on + strand, within Atu6046 at 56.548 kb on - strand, within Atu6046 at 56.558 kb on - strand, within Atu6046 at 56.569 kb on + strand, within Atu6046 at 56.606 kb on + strand, within Atu6046 at 56.629 kb on + strand, within Atu6046 at 56.631 kb on + strand, within Atu6046 at 56.669 kb on + strand, within Atu6046 at 56.669 kb on - strand, within Atu6046 at 56.791 kb on - strand, within Atu6046 at 56.888 kb on + strand, within Atu6046 at 56.910 kb on + strand, within Atu6046 at 56.911 kb on - strand, within Atu6046 at 56.978 kb on + strand, within Atu6046 at 57.199 kb on - strand, within Atu6046 at 57.362 kb on + strand at 57.415 kb on + strand at 57.496 kb on + strand at 57.512 kb on + strand at 57.573 kb on - strand, within Atu6047 at 57.589 kb on + strand, within Atu6047 at 57.637 kb on - strand, within Atu6047 at 57.676 kb on - strand, within Atu6047 at 57.690 kb on - strand, within Atu6047 at 57.744 kb on + strand, within Atu6047 at 57.748 kb on + strand, within Atu6047 at 57.760 kb on + strand, within Atu6047 at 57.827 kb on - strand, within Atu6047 at 57.851 kb on + strand, within Atu6047 at 57.857 kb on + strand, within Atu6047 at 57.867 kb on + strand, within Atu6047 at 57.916 kb on - strand, within Atu6047 at 57.924 kb on - strand, within Atu6047 at 57.946 kb on - strand, within Atu6047 at 57.964 kb on - strand, within Atu6047 at 57.972 kb on + strand, within Atu6047 at 58.059 kb on + strand, within Atu6047 at 58.067 kb on - strand, within Atu6047 at 58.084 kb on + strand, within Atu6047 at 58.084 kb on + strand, within Atu6047 at 58.101 kb on + strand, within Atu6047 at 58.109 kb on - strand, within Atu6047 at 58.129 kb on - strand, within Atu6047 at 58.143 kb on + strand, within Atu6047 at 58.151 kb on - strand, within Atu6047 at 58.199 kb on + strand, within Atu6047 at 58.235 kb on - strand, within Atu6047 at 58.271 kb on - strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.318 kb on - strand, within Atu6047 at 58.318 kb on - strand, within Atu6047 at 58.318 kb on - strand, within Atu6047 at 58.318 kb on - strand, within Atu6047 at 58.328 kb on - strand, within Atu6047 at 58.416 kb on + strand, within Atu6047 at 58.465 kb on + strand at 58.472 kb on + strand at 58.535 kb on + strand at 58.568 kb on - strand at 58.614 kb on - strand at 58.756 kb on - strand at 58.758 kb on - strand at 58.763 kb on + strand at 58.766 kb on - strand at 58.802 kb on - strand at 58.802 kb on - strand at 58.817 kb on - strand at 58.843 kb on + strand at 58.937 kb on - strand at 59.040 kb on + strand, within Atu6048 at 59.043 kb on - strand, within Atu6048 at 59.043 kb on - strand, within Atu6048 at 59.076 kb on - strand, within Atu6048 at 59.152 kb on - strand, within Atu6048 at 59.156 kb on + strand, within Atu6048 at 59.156 kb on + strand, within Atu6048 at 59.156 kb on + strand, within Atu6048 at 59.156 kb on + strand, within Atu6048 at 59.164 kb on - strand, within Atu6048 at 59.164 kb on - strand, within Atu6048 at 59.177 kb on + strand, within Atu6048 at 59.197 kb on - strand, within Atu6048 at 59.197 kb on - strand, within Atu6048 at 59.211 kb on + strand, within Atu6048 at 59.253 kb on - strand, within Atu6048 at 59.254 kb on - strand, within Atu6048 at 59.349 kb on + strand, within Atu6048 at 59.458 kb on - strand, within Atu6048 at 59.483 kb on - strand, within Atu6048 at 59.483 kb on - strand, within Atu6048 at 59.493 kb on - strand, within Atu6048 at 59.493 kb on - strand, within Atu6048 at 59.493 kb on - strand, within Atu6048 at 59.494 kb on + strand, within Atu6048 at 59.495 kb on + strand, within Atu6048 at 59.503 kb on - strand, within Atu6048 at 59.546 kb on + strand, within Atu6048 at 59.554 kb on - strand, within Atu6048 at 59.556 kb on + strand, within Atu6048 at 59.556 kb on + strand, within Atu6048 at 59.556 kb on + strand, within Atu6048 at 59.564 kb on + strand, within Atu6048 at 59.564 kb on - strand, within Atu6048 at 59.564 kb on - strand, within Atu6048 at 59.564 kb on - strand, within Atu6048
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 56,515 + Atu6046 0.25 +0.4 56,548 - Atu6046 0.28 -0.3 56,558 - Atu6046 0.29 -0.2 56,569 + Atu6046 0.30 -1.1 56,606 + Atu6046 0.34 +0.0 56,629 + Atu6046 0.36 -0.4 56,631 + Atu6046 0.36 +0.7 56,669 + Atu6046 0.39 -0.4 56,669 - Atu6046 0.39 -0.1 56,791 - Atu6046 0.50 +0.6 56,888 + Atu6046 0.59 -0.7 56,910 + Atu6046 0.61 -1.0 56,911 - Atu6046 0.61 -1.2 56,978 + Atu6046 0.67 -0.8 57,199 - Atu6046 0.87 +1.6 57,362 + -0.1 57,415 + +1.2 57,496 + -0.8 57,512 + +2.9 57,573 - Atu6047 0.10 +0.4 57,589 + Atu6047 0.12 +1.9 57,637 - Atu6047 0.16 -2.0 57,676 - Atu6047 0.20 -0.2 57,690 - Atu6047 0.21 -0.5 57,744 + Atu6047 0.26 +2.3 57,748 + Atu6047 0.26 -2.3 57,760 + Atu6047 0.27 -1.2 57,827 - Atu6047 0.33 +0.2 57,851 + Atu6047 0.35 +0.7 57,857 + Atu6047 0.36 -0.6 57,867 + Atu6047 0.37 -2.1 57,916 - Atu6047 0.41 +0.4 57,924 - Atu6047 0.42 -0.4 57,946 - Atu6047 0.44 +1.1 57,964 - Atu6047 0.46 -0.9 57,972 + Atu6047 0.46 -0.5 58,059 + Atu6047 0.54 +1.1 58,067 - Atu6047 0.55 -0.5 58,084 + Atu6047 0.56 +2.9 58,084 + Atu6047 0.56 -1.0 58,101 + Atu6047 0.58 -0.9 58,109 - Atu6047 0.59 -0.9 58,129 - Atu6047 0.61 -0.3 58,143 + Atu6047 0.62 -0.9 58,151 - Atu6047 0.63 -0.9 58,199 + Atu6047 0.67 +1.3 58,235 - Atu6047 0.70 +0.1 58,271 - Atu6047 0.73 -0.5 58,310 + Atu6047 0.77 -0.2 58,310 + Atu6047 0.77 +1.9 58,310 + Atu6047 0.77 -0.1 58,310 + Atu6047 0.77 -1.5 58,310 + Atu6047 0.77 -0.5 58,310 + Atu6047 0.77 -1.4 58,318 - Atu6047 0.78 +1.5 58,318 - Atu6047 0.78 -0.1 58,318 - Atu6047 0.78 +0.0 58,318 - Atu6047 0.78 +1.1 58,328 - Atu6047 0.78 -0.8 58,416 + Atu6047 0.86 +1.3 58,465 + +0.0 58,472 + -0.9 58,535 + +1.7 58,568 - +0.4 58,614 - +0.9 58,756 - +0.7 58,758 - -0.4 58,763 + -0.1 58,766 - +0.2 58,802 - +0.2 58,802 - -0.2 58,817 - -1.4 58,843 + -0.4 58,937 - +0.4 59,040 + Atu6048 0.12 +0.1 59,043 - Atu6048 0.12 +0.3 59,043 - Atu6048 0.12 +1.6 59,076 - Atu6048 0.13 +0.9 59,152 - Atu6048 0.16 -0.3 59,156 + Atu6048 0.16 -1.3 59,156 + Atu6048 0.16 +0.4 59,156 + Atu6048 0.16 +0.0 59,156 + Atu6048 0.16 +0.3 59,164 - Atu6048 0.17 +2.9 59,164 - Atu6048 0.17 -0.5 59,177 + Atu6048 0.17 -0.3 59,197 - Atu6048 0.18 -0.1 59,197 - Atu6048 0.18 +0.6 59,211 + Atu6048 0.18 -0.3 59,253 - Atu6048 0.20 +1.0 59,254 - Atu6048 0.20 -0.2 59,349 + Atu6048 0.24 -0.2 59,458 - Atu6048 0.28 +0.1 59,483 - Atu6048 0.29 -0.3 59,483 - Atu6048 0.29 +0.0 59,493 - Atu6048 0.30 +0.3 59,493 - Atu6048 0.30 -0.9 59,493 - Atu6048 0.30 +2.3 59,494 + Atu6048 0.30 +2.3 59,495 + Atu6048 0.30 -1.0 59,503 - Atu6048 0.30 +2.3 59,546 + Atu6048 0.32 +1.3 59,554 - Atu6048 0.32 -0.3 59,556 + Atu6048 0.32 -0.3 59,556 + Atu6048 0.32 +2.3 59,556 + Atu6048 0.32 -0.0 59,564 + Atu6048 0.33 -0.7 59,564 - Atu6048 0.33 +1.7 59,564 - Atu6048 0.33 +4.9 59,564 - Atu6048 0.33 -0.3
Or see this region's nucleotide sequence