Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27915

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27910 and ABID97_RS27915 are separated by 114 nucleotidesABID97_RS27915 and ABID97_RS27920 are separated by 16 nucleotides ABID97_RS27910: ABID97_RS27910 - DUF3422 domain-containing protein, at 502,174 to 503,454 _RS27910 ABID97_RS27915: ABID97_RS27915 - hypothetical protein, at 503,569 to 503,799 _RS27915 ABID97_RS27920: ABID97_RS27920 - 4-hydroxy-2-oxovalerate aldolase, at 503,816 to 504,856 _RS27920 Position (kb) 503 504Strain fitness (log2 ratio) -1 0 1at 502.778 kb on - strand, within ABID97_RS27910at 503.290 kb on + strand, within ABID97_RS27910at 503.290 kb on + strand, within ABID97_RS27910at 503.453 kb on - strandat 503.459 kb on + strandat 503.950 kb on - strand, within ABID97_RS27920at 503.950 kb on - strand, within ABID97_RS27920at 503.992 kb on - strand, within ABID97_RS27920at 504.091 kb on - strand, within ABID97_RS27920at 504.363 kb on + strand, within ABID97_RS27920at 504.783 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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502,778 - ABID97_RS27910 0.47 +1.4
503,290 + ABID97_RS27910 0.87 +0.3
503,290 + ABID97_RS27910 0.87 -0.7
503,453 - -0.7
503,459 + +0.0
503,950 - ABID97_RS27920 0.13 -0.0
503,950 - ABID97_RS27920 0.13 -0.1
503,992 - ABID97_RS27920 0.17 +0.0
504,091 - ABID97_RS27920 0.26 +0.7
504,363 + ABID97_RS27920 0.53 +0.2
504,783 + +1.4

Or see this region's nucleotide sequence