Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26445 and ABID97_RS26450 are separated by 16 nucleotides ABID97_RS26450 and ABID97_RS26455 are separated by 12 nucleotides ABID97_RS26455 and ABID97_RS26460 overlap by 4 nucleotides
ABID97_RS26445: ABID97_RS26445 - LysR family transcriptional regulator, at 207,420 to 208,364
_RS26445
ABID97_RS26450: ABID97_RS26450 - hypothetical protein, at 208,381 to 208,749
_RS26450
ABID97_RS26455: ABID97_RS26455 - cytochrome c oxidase subunit 3, at 208,762 to 209,361
_RS26455
ABID97_RS26460: ABID97_RS26460 - cytochrome c oxidase subunit I, at 209,358 to 211,322
_RS26460
Position (kb) 208
209
210 Strain fitness (log2 ratio) -1
0
1 at 208.668 kb on - strand, within ABID97_RS26450 at 208.829 kb on + strand, within ABID97_RS26455 at 208.829 kb on + strand, within ABID97_RS26455 at 208.913 kb on + strand, within ABID97_RS26455 at 208.914 kb on - strand, within ABID97_RS26455 at 208.914 kb on - strand, within ABID97_RS26455 at 209.223 kb on - strand, within ABID97_RS26455 at 209.903 kb on - strand, within ABID97_RS26460 at 209.908 kb on + strand, within ABID97_RS26460 at 210.050 kb on - strand, within ABID97_RS26460 at 210.094 kb on + strand, within ABID97_RS26460 at 210.094 kb on + strand, within ABID97_RS26460 at 210.094 kb on + strand, within ABID97_RS26460 at 210.118 kb on + strand, within ABID97_RS26460 at 210.119 kb on - strand, within ABID97_RS26460
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 208,668 - ABID97_RS26450 0.78 +0.6 208,829 + ABID97_RS26455 0.11 -0.0 208,829 + ABID97_RS26455 0.11 -0.2 208,913 + ABID97_RS26455 0.25 +0.0 208,914 - ABID97_RS26455 0.25 +0.0 208,914 - ABID97_RS26455 0.25 -0.5 209,223 - ABID97_RS26455 0.77 -0.5 209,903 - ABID97_RS26460 0.28 -1.1 209,908 + ABID97_RS26460 0.28 +0.2 210,050 - ABID97_RS26460 0.35 +0.9 210,094 + ABID97_RS26460 0.37 +1.6 210,094 + ABID97_RS26460 0.37 -0.2 210,094 + ABID97_RS26460 0.37 +0.7 210,118 + ABID97_RS26460 0.39 -0.1 210,119 - ABID97_RS26460 0.39 +0.6
Or see this region's nucleotide sequence