Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25995

Experiment: Adenine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS25990 and ABID97_RS25995 are separated by 31 nucleotidesABID97_RS25995 and ABID97_RS26000 are separated by 27 nucleotides ABID97_RS25990: ABID97_RS25990 - aldehyde dehydrogenase, at 121,907 to 123,397 _RS25990 ABID97_RS25995: ABID97_RS25995 - SDR family oxidoreductase, at 123,429 to 124,217 _RS25995 ABID97_RS26000: ABID97_RS26000 - quinone oxidoreductase, at 124,245 to 125,228 _RS26000 Position (kb) 123 124 125Strain fitness (log2 ratio) -1 0 1at 122.627 kb on + strand, within ABID97_RS25990at 122.628 kb on - strand, within ABID97_RS25990at 122.931 kb on - strand, within ABID97_RS25990at 122.931 kb on - strand, within ABID97_RS25990at 124.375 kb on - strand, within ABID97_RS26000at 124.513 kb on - strand, within ABID97_RS26000at 124.513 kb on - strand, within ABID97_RS26000at 124.709 kb on - strand, within ABID97_RS26000at 124.709 kb on - strand, within ABID97_RS26000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
remove
122,627 + ABID97_RS25990 0.48 -1.3
122,628 - ABID97_RS25990 0.48 -0.0
122,931 - ABID97_RS25990 0.69 -1.0
122,931 - ABID97_RS25990 0.69 -0.7
124,375 - ABID97_RS26000 0.13 +0.2
124,513 - ABID97_RS26000 0.27 +0.3
124,513 - ABID97_RS26000 0.27 +0.4
124,709 - ABID97_RS26000 0.47 +0.2
124,709 - ABID97_RS26000 0.47 +0.1

Or see this region's nucleotide sequence