Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25875

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25870 and ABID97_RS25875 are separated by 40 nucleotidesABID97_RS25875 and ABID97_RS25880 are separated by 173 nucleotides ABID97_RS25870: ABID97_RS25870 - IlvD/Edd family dehydratase, at 94,168 to 95,922 _RS25870 ABID97_RS25875: ABID97_RS25875 - tripartite tricarboxylate transporter substrate binding protein, at 95,963 to 96,961 _RS25875 ABID97_RS25880: ABID97_RS25880 - NAD-dependent succinate-semialdehyde dehydrogenase, at 97,135 to 98,613 _RS25880 Position (kb) 95 96 97Strain fitness (log2 ratio) -1 0 1 2 3at 95.600 kb on + strand, within ABID97_RS25870at 95.846 kb on + strandat 96.070 kb on - strand, within ABID97_RS25875at 96.390 kb on + strand, within ABID97_RS25875at 96.411 kb on - strand, within ABID97_RS25875at 97.127 kb on - strandat 97.158 kb on - strandat 97.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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95,600 + ABID97_RS25870 0.82 +0.1
95,846 + -0.4
96,070 - ABID97_RS25875 0.11 +0.0
96,390 + ABID97_RS25875 0.43 +0.3
96,411 - ABID97_RS25875 0.45 +0.2
97,127 - -0.0
97,158 - +0.6
97,488 - +3.5

Or see this region's nucleotide sequence