Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23150

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23145 and ABID97_RS23150 overlap by 4 nucleotidesABID97_RS23150 and ABID97_RS23155 are separated by 5 nucleotidesABID97_RS23155 and ABID97_RS23160 are separated by 37 nucleotides ABID97_RS23145: ABID97_RS23145 - histidinol-phosphate transaminase, at 4,785,864 to 4,786,952 _RS23145 ABID97_RS23150: ABID97_RS23150 - hypothetical protein, at 4,786,949 to 4,787,320 _RS23150 ABID97_RS23155: ABID97_RS23155 - hypothetical protein, at 4,787,326 to 4,788,165 _RS23155 ABID97_RS23160: ABID97_RS23160 - histidinol dehydrogenase, at 4,788,203 to 4,789,525 _RS23160 Position (kb) 4786 4787 4788Strain fitness (log2 ratio) -2 -1 0 1 2at 4785.959 kb on + strandat 4785.960 kb on - strandat 4786.198 kb on + strand, within ABID97_RS23145at 4786.198 kb on + strand, within ABID97_RS23145at 4786.198 kb on + strand, within ABID97_RS23145at 4786.199 kb on - strand, within ABID97_RS23145at 4786.252 kb on + strand, within ABID97_RS23145at 4786.253 kb on - strand, within ABID97_RS23145at 4786.336 kb on + strand, within ABID97_RS23145at 4786.336 kb on + strand, within ABID97_RS23145at 4786.336 kb on + strand, within ABID97_RS23145at 4786.336 kb on + strand, within ABID97_RS23145at 4786.337 kb on - strand, within ABID97_RS23145at 4786.337 kb on - strand, within ABID97_RS23145at 4786.360 kb on + strand, within ABID97_RS23145at 4786.360 kb on + strand, within ABID97_RS23145at 4786.361 kb on - strand, within ABID97_RS23145at 4786.471 kb on + strand, within ABID97_RS23145at 4786.472 kb on - strand, within ABID97_RS23145at 4786.472 kb on - strand, within ABID97_RS23145at 4786.591 kb on + strand, within ABID97_RS23145at 4786.591 kb on + strand, within ABID97_RS23145at 4786.591 kb on + strand, within ABID97_RS23145at 4786.591 kb on + strand, within ABID97_RS23145at 4786.591 kb on + strand, within ABID97_RS23145at 4786.591 kb on + strand, within ABID97_RS23145at 4786.592 kb on - strand, within ABID97_RS23145at 4786.592 kb on - strand, within ABID97_RS23145at 4786.592 kb on - strand, within ABID97_RS23145at 4786.592 kb on - strand, within ABID97_RS23145at 4786.592 kb on - strand, within ABID97_RS23145at 4786.592 kb on - strand, within ABID97_RS23145at 4786.592 kb on - strand, within ABID97_RS23145at 4786.592 kb on - strand, within ABID97_RS23145at 4786.885 kb on + strandat 4786.886 kb on - strandat 4787.019 kb on + strand, within ABID97_RS23150at 4787.019 kb on + strand, within ABID97_RS23150at 4787.019 kb on + strand, within ABID97_RS23150at 4787.019 kb on + strand, within ABID97_RS23150at 4787.019 kb on + strand, within ABID97_RS23150at 4787.019 kb on + strand, within ABID97_RS23150at 4787.019 kb on + strand, within ABID97_RS23150at 4787.019 kb on + strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.020 kb on - strand, within ABID97_RS23150at 4787.052 kb on + strand, within ABID97_RS23150at 4787.172 kb on + strand, within ABID97_RS23150at 4787.172 kb on + strand, within ABID97_RS23150at 4787.173 kb on - strand, within ABID97_RS23150at 4787.173 kb on - strand, within ABID97_RS23150at 4787.173 kb on - strand, within ABID97_RS23150at 4787.173 kb on - strand, within ABID97_RS23150at 4787.175 kb on + strand, within ABID97_RS23150at 4787.175 kb on + strand, within ABID97_RS23150at 4787.175 kb on + strand, within ABID97_RS23150at 4787.176 kb on - strand, within ABID97_RS23150at 4787.597 kb on + strand, within ABID97_RS23155at 4787.597 kb on + strand, within ABID97_RS23155at 4787.597 kb on + strand, within ABID97_RS23155at 4787.669 kb on + strand, within ABID97_RS23155at 4787.669 kb on + strand, within ABID97_RS23155at 4787.669 kb on + strand, within ABID97_RS23155at 4787.888 kb on + strand, within ABID97_RS23155at 4787.888 kb on + strand, within ABID97_RS23155at 4787.889 kb on - strand, within ABID97_RS23155at 4788.139 kb on - strandat 4788.197 kb on - strandat 4788.212 kb on - strandat 4788.212 kb on - strandat 4788.212 kb on - strandat 4788.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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4,785,959 + +1.4
4,785,960 - +2.1
4,786,198 + ABID97_RS23145 0.31 +0.3
4,786,198 + ABID97_RS23145 0.31 +0.4
4,786,198 + ABID97_RS23145 0.31 -0.2
4,786,199 - ABID97_RS23145 0.31 +0.2
4,786,252 + ABID97_RS23145 0.36 +0.1
4,786,253 - ABID97_RS23145 0.36 +0.4
4,786,336 + ABID97_RS23145 0.43 +0.2
4,786,336 + ABID97_RS23145 0.43 +0.3
4,786,336 + ABID97_RS23145 0.43 +0.5
4,786,336 + ABID97_RS23145 0.43 +1.2
4,786,337 - ABID97_RS23145 0.43 -1.1
4,786,337 - ABID97_RS23145 0.43 +0.4
4,786,360 + ABID97_RS23145 0.46 +0.0
4,786,360 + ABID97_RS23145 0.46 +0.8
4,786,361 - ABID97_RS23145 0.46 -0.3
4,786,471 + ABID97_RS23145 0.56 +0.0
4,786,472 - ABID97_RS23145 0.56 -0.5
4,786,472 - ABID97_RS23145 0.56 -0.2
4,786,591 + ABID97_RS23145 0.67 -1.5
4,786,591 + ABID97_RS23145 0.67 +0.7
4,786,591 + ABID97_RS23145 0.67 +0.2
4,786,591 + ABID97_RS23145 0.67 -0.8
4,786,591 + ABID97_RS23145 0.67 +0.6
4,786,591 + ABID97_RS23145 0.67 +1.0
4,786,592 - ABID97_RS23145 0.67 -1.8
4,786,592 - ABID97_RS23145 0.67 +0.1
4,786,592 - ABID97_RS23145 0.67 +0.5
4,786,592 - ABID97_RS23145 0.67 -0.6
4,786,592 - ABID97_RS23145 0.67 -0.4
4,786,592 - ABID97_RS23145 0.67 +0.0
4,786,592 - ABID97_RS23145 0.67 -0.2
4,786,592 - ABID97_RS23145 0.67 +0.9
4,786,885 + +0.8
4,786,886 - +0.0
4,787,019 + ABID97_RS23150 0.19 +0.1
4,787,019 + ABID97_RS23150 0.19 +1.7
4,787,019 + ABID97_RS23150 0.19 -0.3
4,787,019 + ABID97_RS23150 0.19 +0.2
4,787,019 + ABID97_RS23150 0.19 +0.1
4,787,019 + ABID97_RS23150 0.19 -0.0
4,787,019 + ABID97_RS23150 0.19 +0.3
4,787,019 + ABID97_RS23150 0.19 +0.0
4,787,020 - ABID97_RS23150 0.19 +0.2
4,787,020 - ABID97_RS23150 0.19 -0.6
4,787,020 - ABID97_RS23150 0.19 +0.6
4,787,020 - ABID97_RS23150 0.19 +0.2
4,787,020 - ABID97_RS23150 0.19 -0.1
4,787,020 - ABID97_RS23150 0.19 +0.2
4,787,020 - ABID97_RS23150 0.19 -0.5
4,787,020 - ABID97_RS23150 0.19 -0.3
4,787,020 - ABID97_RS23150 0.19 +0.6
4,787,052 + ABID97_RS23150 0.28 +0.2
4,787,172 + ABID97_RS23150 0.60 +0.1
4,787,172 + ABID97_RS23150 0.60 +0.7
4,787,173 - ABID97_RS23150 0.60 +1.2
4,787,173 - ABID97_RS23150 0.60 -0.2
4,787,173 - ABID97_RS23150 0.60 +0.1
4,787,173 - ABID97_RS23150 0.60 -0.2
4,787,175 + ABID97_RS23150 0.61 +0.1
4,787,175 + ABID97_RS23150 0.61 +0.2
4,787,175 + ABID97_RS23150 0.61 -0.0
4,787,176 - ABID97_RS23150 0.61 -0.1
4,787,597 + ABID97_RS23155 0.32 -0.0
4,787,597 + ABID97_RS23155 0.32 -1.3
4,787,597 + ABID97_RS23155 0.32 +0.7
4,787,669 + ABID97_RS23155 0.41 -0.2
4,787,669 + ABID97_RS23155 0.41 -0.3
4,787,669 + ABID97_RS23155 0.41 +0.3
4,787,888 + ABID97_RS23155 0.67 +0.0
4,787,888 + ABID97_RS23155 0.67 +0.5
4,787,889 - ABID97_RS23155 0.67 -0.1
4,788,139 - +0.3
4,788,197 - -0.9
4,788,212 - -0.4
4,788,212 - +2.1
4,788,212 - -0.4
4,788,212 - -0.3

Or see this region's nucleotide sequence