Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20215

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20205 and ABID97_RS20210 overlap by 4 nucleotidesABID97_RS20210 and ABID97_RS20215 overlap by 1 nucleotidesABID97_RS20215 and ABID97_RS20220 are separated by 12 nucleotides ABID97_RS20205: ABID97_RS20205 - nicotinamide riboside transporter PnuC, at 4,172,982 to 4,173,605 _RS20205 ABID97_RS20210: ABID97_RS20210 - ATP-binding protein, at 4,173,602 to 4,174,300 _RS20210 ABID97_RS20215: ABID97_RS20215 - hypothetical protein, at 4,174,300 to 4,175,277 _RS20215 ABID97_RS20220: ABID97_RS20220 - Hsp33 family molecular chaperone HslO, at 4,175,290 to 4,176,297 _RS20220 Position (kb) 4174 4175 4176Strain fitness (log2 ratio) -2 -1 0 1 2at 4173.476 kb on - strand, within ABID97_RS20205at 4173.526 kb on - strand, within ABID97_RS20205at 4173.558 kb on + strandat 4173.559 kb on - strandat 4173.735 kb on - strand, within ABID97_RS20210at 4173.881 kb on + strand, within ABID97_RS20210at 4173.882 kb on - strand, within ABID97_RS20210at 4173.882 kb on - strand, within ABID97_RS20210at 4174.511 kb on - strand, within ABID97_RS20215at 4174.849 kb on + strand, within ABID97_RS20215at 4174.849 kb on + strand, within ABID97_RS20215at 4174.850 kb on - strand, within ABID97_RS20215at 4175.077 kb on + strand, within ABID97_RS20215at 4175.077 kb on + strand, within ABID97_RS20215at 4175.077 kb on + strand, within ABID97_RS20215at 4175.077 kb on + strand, within ABID97_RS20215at 4175.078 kb on - strand, within ABID97_RS20215at 4175.078 kb on - strand, within ABID97_RS20215at 4175.078 kb on - strand, within ABID97_RS20215at 4175.078 kb on - strand, within ABID97_RS20215at 4175.078 kb on - strand, within ABID97_RS20215at 4175.078 kb on - strand, within ABID97_RS20215at 4175.147 kb on + strand, within ABID97_RS20215at 4175.148 kb on - strand, within ABID97_RS20215at 4175.291 kb on + strandat 4175.636 kb on + strand, within ABID97_RS20220at 4175.637 kb on - strand, within ABID97_RS20220at 4175.637 kb on - strand, within ABID97_RS20220at 4175.819 kb on + strand, within ABID97_RS20220at 4175.819 kb on + strand, within ABID97_RS20220at 4175.819 kb on + strand, within ABID97_RS20220at 4175.820 kb on - strand, within ABID97_RS20220at 4175.820 kb on - strand, within ABID97_RS20220at 4175.820 kb on - strand, within ABID97_RS20220at 4175.820 kb on - strand, within ABID97_RS20220at 4175.820 kb on - strand, within ABID97_RS20220at 4175.892 kb on - strand, within ABID97_RS20220at 4176.177 kb on - strand, within ABID97_RS20220at 4176.177 kb on - strand, within ABID97_RS20220

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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4,173,476 - ABID97_RS20205 0.79 +2.1
4,173,526 - ABID97_RS20205 0.87 +0.2
4,173,558 + -1.4
4,173,559 - -0.9
4,173,735 - ABID97_RS20210 0.19 -1.2
4,173,881 + ABID97_RS20210 0.40 -0.9
4,173,882 - ABID97_RS20210 0.40 -1.1
4,173,882 - ABID97_RS20210 0.40 -2.0
4,174,511 - ABID97_RS20215 0.22 -0.3
4,174,849 + ABID97_RS20215 0.56 -1.0
4,174,849 + ABID97_RS20215 0.56 +0.1
4,174,850 - ABID97_RS20215 0.56 -0.4
4,175,077 + ABID97_RS20215 0.79 -0.5
4,175,077 + ABID97_RS20215 0.79 +0.0
4,175,077 + ABID97_RS20215 0.79 +0.2
4,175,077 + ABID97_RS20215 0.79 +0.1
4,175,078 - ABID97_RS20215 0.80 +0.0
4,175,078 - ABID97_RS20215 0.80 +0.0
4,175,078 - ABID97_RS20215 0.80 -0.4
4,175,078 - ABID97_RS20215 0.80 -0.0
4,175,078 - ABID97_RS20215 0.80 +0.4
4,175,078 - ABID97_RS20215 0.80 -0.0
4,175,147 + ABID97_RS20215 0.87 -0.1
4,175,148 - ABID97_RS20215 0.87 +0.3
4,175,291 + +0.3
4,175,636 + ABID97_RS20220 0.34 +0.2
4,175,637 - ABID97_RS20220 0.34 +0.1
4,175,637 - ABID97_RS20220 0.34 -0.9
4,175,819 + ABID97_RS20220 0.52 -0.2
4,175,819 + ABID97_RS20220 0.52 -0.1
4,175,819 + ABID97_RS20220 0.52 +0.4
4,175,820 - ABID97_RS20220 0.53 +0.1
4,175,820 - ABID97_RS20220 0.53 +0.3
4,175,820 - ABID97_RS20220 0.53 -0.2
4,175,820 - ABID97_RS20220 0.53 -0.6
4,175,820 - ABID97_RS20220 0.53 -0.4
4,175,892 - ABID97_RS20220 0.60 +0.1
4,176,177 - ABID97_RS20220 0.88 -0.6
4,176,177 - ABID97_RS20220 0.88 -0.4

Or see this region's nucleotide sequence