Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19215 and ABID97_RS19220 overlap by 8 nucleotides ABID97_RS19220 and ABID97_RS19225 overlap by 32 nucleotides ABID97_RS19225 and ABID97_RS19230 are separated by 169 nucleotides
ABID97_RS19215: ABID97_RS19215 - error-prone DNA polymerase, at 3,963,697 to 3,967,053
_RS19215
ABID97_RS19220: ABID97_RS19220 - DNA polymerase Y family protein, at 3,967,046 to 3,968,395
_RS19220
ABID97_RS19225: ABID97_RS19225 - translesion DNA synthesis-associated protein ImuA, at 3,968,364 to 3,969,170
_RS19225
ABID97_RS19230: ABID97_RS19230 - CmcJ/NvfI family oxidoreductase, at 3,969,340 to 3,970,173
_RS19230
Position (kb)
3967
3968
3969 Strain fitness (log2 ratio)
-1
0
1 at 3966.107 kb on + strand, within ABID97_RS19215 at 3966.107 kb on + strand, within ABID97_RS19215 at 3966.107 kb on + strand, within ABID97_RS19215 at 3966.107 kb on + strand, within ABID97_RS19215 at 3966.186 kb on - strand, within ABID97_RS19215 at 3967.053 kb on + strand at 3967.155 kb on + strand at 3967.155 kb on + strand at 3967.155 kb on + strand at 3967.155 kb on + strand at 3967.156 kb on - strand at 3967.156 kb on - strand at 3967.314 kb on + strand, within ABID97_RS19220 at 3967.315 kb on - strand, within ABID97_RS19220 at 3968.299 kb on - strand at 3968.902 kb on + strand, within ABID97_RS19225 at 3968.902 kb on + strand, within ABID97_RS19225 at 3968.902 kb on + strand, within ABID97_RS19225 at 3968.903 kb on - strand, within ABID97_RS19225 at 3969.184 kb on - strand at 3969.202 kb on + strand at 3969.255 kb on + strand at 3969.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 3,966,107 + ABID97_RS19215 0.72 -0.1 3,966,107 + ABID97_RS19215 0.72 +0.1 3,966,107 + ABID97_RS19215 0.72 -0.0 3,966,107 + ABID97_RS19215 0.72 -0.4 3,966,186 - ABID97_RS19215 0.74 -0.1 3,967,053 + +0.1 3,967,155 + -0.3 3,967,155 + +0.0 3,967,155 + +0.5 3,967,155 + -0.1 3,967,156 - -1.4 3,967,156 - +0.4 3,967,314 + ABID97_RS19220 0.20 -1.0 3,967,315 - ABID97_RS19220 0.20 +0.1 3,968,299 - -0.2 3,968,902 + ABID97_RS19225 0.67 +0.6 3,968,902 + ABID97_RS19225 0.67 +0.5 3,968,902 + ABID97_RS19225 0.67 -0.0 3,968,903 - ABID97_RS19225 0.67 -0.2 3,969,184 - -1.2 3,969,202 + -0.8 3,969,255 + -0.6 3,969,374 - +0.1
Or see this region's nucleotide sequence