Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19220

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19215 and ABID97_RS19220 overlap by 8 nucleotidesABID97_RS19220 and ABID97_RS19225 overlap by 32 nucleotidesABID97_RS19225 and ABID97_RS19230 are separated by 169 nucleotides ABID97_RS19215: ABID97_RS19215 - error-prone DNA polymerase, at 3,963,697 to 3,967,053 _RS19215 ABID97_RS19220: ABID97_RS19220 - DNA polymerase Y family protein, at 3,967,046 to 3,968,395 _RS19220 ABID97_RS19225: ABID97_RS19225 - translesion DNA synthesis-associated protein ImuA, at 3,968,364 to 3,969,170 _RS19225 ABID97_RS19230: ABID97_RS19230 - CmcJ/NvfI family oxidoreductase, at 3,969,340 to 3,970,173 _RS19230 Position (kb) 3967 3968 3969Strain fitness (log2 ratio) -1 0 1at 3966.107 kb on + strand, within ABID97_RS19215at 3966.107 kb on + strand, within ABID97_RS19215at 3966.107 kb on + strand, within ABID97_RS19215at 3966.107 kb on + strand, within ABID97_RS19215at 3966.186 kb on - strand, within ABID97_RS19215at 3967.053 kb on + strandat 3967.155 kb on + strandat 3967.155 kb on + strandat 3967.155 kb on + strandat 3967.155 kb on + strandat 3967.156 kb on - strandat 3967.156 kb on - strandat 3967.314 kb on + strand, within ABID97_RS19220at 3967.315 kb on - strand, within ABID97_RS19220at 3968.299 kb on - strandat 3968.902 kb on + strand, within ABID97_RS19225at 3968.902 kb on + strand, within ABID97_RS19225at 3968.902 kb on + strand, within ABID97_RS19225at 3968.903 kb on - strand, within ABID97_RS19225at 3969.184 kb on - strandat 3969.202 kb on + strandat 3969.255 kb on + strandat 3969.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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3,966,107 + ABID97_RS19215 0.72 -0.1
3,966,107 + ABID97_RS19215 0.72 +0.1
3,966,107 + ABID97_RS19215 0.72 -0.0
3,966,107 + ABID97_RS19215 0.72 -0.4
3,966,186 - ABID97_RS19215 0.74 -0.1
3,967,053 + +0.1
3,967,155 + -0.3
3,967,155 + +0.0
3,967,155 + +0.5
3,967,155 + -0.1
3,967,156 - -1.4
3,967,156 - +0.4
3,967,314 + ABID97_RS19220 0.20 -1.0
3,967,315 - ABID97_RS19220 0.20 +0.1
3,968,299 - -0.2
3,968,902 + ABID97_RS19225 0.67 +0.6
3,968,902 + ABID97_RS19225 0.67 +0.5
3,968,902 + ABID97_RS19225 0.67 -0.0
3,968,903 - ABID97_RS19225 0.67 -0.2
3,969,184 - -1.2
3,969,202 + -0.8
3,969,255 + -0.6
3,969,374 - +0.1

Or see this region's nucleotide sequence