Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18865

Experiment: Adenine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18855 and ABID97_RS18860 are separated by 27 nucleotidesABID97_RS18860 and ABID97_RS18865 overlap by 8 nucleotidesABID97_RS18865 and ABID97_RS18870 overlap by 4 nucleotides ABID97_RS18855: ABID97_RS18855 - GMC family oxidoreductase N-terminal domain-containing protein, at 3,882,981 to 3,884,633 _RS18855 ABID97_RS18860: ABID97_RS18860 - ABC transporter ATP-binding protein, at 3,884,661 to 3,885,362 _RS18860 ABID97_RS18865: ABID97_RS18865 - ABC transporter ATP-binding protein, at 3,885,355 to 3,886,110 _RS18865 ABID97_RS18870: ABID97_RS18870 - branched-chain amino acid ABC transporter permease, at 3,886,107 to 3,887,132 _RS18870 Position (kb) 3885 3886 3887Strain fitness (log2 ratio) -1 0 1at 3884.447 kb on - strand, within ABID97_RS18855at 3884.618 kb on - strandat 3884.916 kb on + strand, within ABID97_RS18860at 3885.381 kb on - strandat 3885.596 kb on - strand, within ABID97_RS18865at 3885.596 kb on - strand, within ABID97_RS18865at 3886.276 kb on + strand, within ABID97_RS18870at 3886.276 kb on + strand, within ABID97_RS18870at 3886.276 kb on + strand, within ABID97_RS18870at 3886.288 kb on + strand, within ABID97_RS18870at 3886.489 kb on + strand, within ABID97_RS18870at 3886.490 kb on - strand, within ABID97_RS18870at 3886.757 kb on - strand, within ABID97_RS18870at 3886.937 kb on - strand, within ABID97_RS18870at 3886.987 kb on + strand, within ABID97_RS18870at 3886.987 kb on + strand, within ABID97_RS18870at 3886.988 kb on - strand, within ABID97_RS18870at 3886.988 kb on - strand, within ABID97_RS18870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
remove
3,884,447 - ABID97_RS18855 0.89 +0.0
3,884,618 - +0.0
3,884,916 + ABID97_RS18860 0.36 +0.0
3,885,381 - +0.4
3,885,596 - ABID97_RS18865 0.32 +0.7
3,885,596 - ABID97_RS18865 0.32 +0.0
3,886,276 + ABID97_RS18870 0.16 -0.1
3,886,276 + ABID97_RS18870 0.16 +0.4
3,886,276 + ABID97_RS18870 0.16 +0.1
3,886,288 + ABID97_RS18870 0.18 -0.3
3,886,489 + ABID97_RS18870 0.37 -1.5
3,886,490 - ABID97_RS18870 0.37 +1.3
3,886,757 - ABID97_RS18870 0.63 -0.3
3,886,937 - ABID97_RS18870 0.81 +0.1
3,886,987 + ABID97_RS18870 0.86 -0.2
3,886,987 + ABID97_RS18870 0.86 -0.6
3,886,988 - ABID97_RS18870 0.86 -1.1
3,886,988 - ABID97_RS18870 0.86 -0.1

Or see this region's nucleotide sequence