Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14315

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14305 and ABID97_RS14310 overlap by 2 nucleotidesABID97_RS14310 and ABID97_RS14315 overlap by 4 nucleotidesABID97_RS14315 and ABID97_RS14320 are separated by 33 nucleotidesABID97_RS14320 and ABID97_RS14325 are separated by 10 nucleotides ABID97_RS14305: ABID97_RS14305 - arylesterase, at 2,974,281 to 2,974,961 _RS14305 ABID97_RS14310: ABID97_RS14310 - ATP-binding cassette domain-containing protein, at 2,974,960 to 2,975,682 _RS14310 ABID97_RS14315: ABID97_RS14315 - hypothetical protein, at 2,975,679 to 2,976,659 _RS14315 ABID97_RS14320: ABID97_RS14320 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,976,693 to 2,977,439 _RS14320 ABID97_RS14325: ABID97_RS14325 - NAD(P)/FAD-dependent oxidoreductase, at 2,977,450 to 2,978,655 _RS14325 Position (kb) 2975 2976 2977Strain fitness (log2 ratio) -1 0 1at 2974.925 kb on + strandat 2974.925 kb on + strandat 2974.925 kb on + strandat 2974.926 kb on - strandat 2975.874 kb on + strand, within ABID97_RS14315at 2975.874 kb on + strand, within ABID97_RS14315at 2975.875 kb on - strand, within ABID97_RS14315at 2975.875 kb on - strand, within ABID97_RS14315at 2976.363 kb on + strand, within ABID97_RS14315at 2976.363 kb on + strand, within ABID97_RS14315at 2976.364 kb on - strand, within ABID97_RS14315at 2976.364 kb on - strand, within ABID97_RS14315at 2976.552 kb on + strand, within ABID97_RS14315at 2976.552 kb on + strand, within ABID97_RS14315at 2976.684 kb on - strandat 2977.155 kb on + strand, within ABID97_RS14320at 2977.155 kb on + strand, within ABID97_RS14320at 2977.156 kb on - strand, within ABID97_RS14320at 2977.251 kb on + strand, within ABID97_RS14320at 2977.410 kb on + strandat 2977.411 kb on - strandat 2977.411 kb on - strandat 2977.452 kb on - strandat 2977.487 kb on + strandat 2977.487 kb on + strandat 2977.487 kb on + strandat 2977.488 kb on - strandat 2977.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,974,925 + -0.3
2,974,925 + -0.3
2,974,925 + -0.4
2,974,926 - -0.2
2,975,874 + ABID97_RS14315 0.20 -1.4
2,975,874 + ABID97_RS14315 0.20 +0.1
2,975,875 - ABID97_RS14315 0.20 -0.4
2,975,875 - ABID97_RS14315 0.20 -0.2
2,976,363 + ABID97_RS14315 0.70 -0.1
2,976,363 + ABID97_RS14315 0.70 +0.2
2,976,364 - ABID97_RS14315 0.70 +0.1
2,976,364 - ABID97_RS14315 0.70 +0.6
2,976,552 + ABID97_RS14315 0.89 -0.4
2,976,552 + ABID97_RS14315 0.89 -1.0
2,976,684 - +0.7
2,977,155 + ABID97_RS14320 0.62 +1.1
2,977,155 + ABID97_RS14320 0.62 +1.6
2,977,156 - ABID97_RS14320 0.62 +0.2
2,977,251 + ABID97_RS14320 0.75 -0.7
2,977,410 + +0.2
2,977,411 - +0.5
2,977,411 - +0.1
2,977,452 - -0.3
2,977,487 + +0.0
2,977,487 + +0.3
2,977,487 + +0.6
2,977,488 - -0.0
2,977,488 - -0.3

Or see this region's nucleotide sequence