Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11495 and ABID97_RS11500 are separated by 46 nucleotides ABID97_RS11500 and ABID97_RS11505 are separated by 7 nucleotides ABID97_RS11505 and ABID97_RS11510 are separated by 97 nucleotides
ABID97_RS11495: ABID97_RS11495 - indoleacetamide hydrolase, at 2,372,197 to 2,373,603
_RS11495
ABID97_RS11500: ABID97_RS11500 - substrate-binding domain-containing protein, at 2,373,650 to 2,374,798
_RS11500
ABID97_RS11505: ABID97_RS11505 - branched-chain amino acid ABC transporter permease, at 2,374,806 to 2,375,660
_RS11505
ABID97_RS11510: ABID97_RS11510 - ATP-binding cassette domain-containing protein, at 2,375,758 to 2,377,446
_RS11510
Position (kb)
2373
2374
2375 Strain fitness (log2 ratio)
-1
0
1 at 2374.026 kb on - strand, within ABID97_RS11500 at 2374.056 kb on - strand, within ABID97_RS11500 at 2374.155 kb on - strand, within ABID97_RS11500 at 2374.511 kb on + strand, within ABID97_RS11500 at 2374.512 kb on - strand, within ABID97_RS11500 at 2374.568 kb on + strand, within ABID97_RS11500 at 2374.658 kb on + strand, within ABID97_RS11500 at 2374.715 kb on + strand at 2374.716 kb on - strand at 2374.716 kb on - strand at 2375.142 kb on + strand, within ABID97_RS11505 at 2375.142 kb on + strand, within ABID97_RS11505 at 2375.143 kb on - strand, within ABID97_RS11505 at 2375.143 kb on - strand, within ABID97_RS11505 at 2375.460 kb on + strand, within ABID97_RS11505
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 2,374,026 - ABID97_RS11500 0.33 -0.2 2,374,056 - ABID97_RS11500 0.35 +0.1 2,374,155 - ABID97_RS11500 0.44 -1.0 2,374,511 + ABID97_RS11500 0.75 +0.1 2,374,512 - ABID97_RS11500 0.75 -0.5 2,374,568 + ABID97_RS11500 0.80 +0.3 2,374,658 + ABID97_RS11500 0.88 -1.4 2,374,715 + -0.0 2,374,716 - -0.2 2,374,716 - -0.4 2,375,142 + ABID97_RS11505 0.39 -0.3 2,375,142 + ABID97_RS11505 0.39 +0.5 2,375,143 - ABID97_RS11505 0.39 +0.0 2,375,143 - ABID97_RS11505 0.39 -0.0 2,375,460 + ABID97_RS11505 0.76 +0.4
Or see this region's nucleotide sequence