Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11500

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11495 and ABID97_RS11500 are separated by 46 nucleotidesABID97_RS11500 and ABID97_RS11505 are separated by 7 nucleotidesABID97_RS11505 and ABID97_RS11510 are separated by 97 nucleotides ABID97_RS11495: ABID97_RS11495 - indoleacetamide hydrolase, at 2,372,197 to 2,373,603 _RS11495 ABID97_RS11500: ABID97_RS11500 - substrate-binding domain-containing protein, at 2,373,650 to 2,374,798 _RS11500 ABID97_RS11505: ABID97_RS11505 - branched-chain amino acid ABC transporter permease, at 2,374,806 to 2,375,660 _RS11505 ABID97_RS11510: ABID97_RS11510 - ATP-binding cassette domain-containing protein, at 2,375,758 to 2,377,446 _RS11510 Position (kb) 2373 2374 2375Strain fitness (log2 ratio) -1 0 1at 2374.026 kb on - strand, within ABID97_RS11500at 2374.056 kb on - strand, within ABID97_RS11500at 2374.155 kb on - strand, within ABID97_RS11500at 2374.511 kb on + strand, within ABID97_RS11500at 2374.512 kb on - strand, within ABID97_RS11500at 2374.568 kb on + strand, within ABID97_RS11500at 2374.658 kb on + strand, within ABID97_RS11500at 2374.715 kb on + strandat 2374.716 kb on - strandat 2374.716 kb on - strandat 2375.142 kb on + strand, within ABID97_RS11505at 2375.142 kb on + strand, within ABID97_RS11505at 2375.143 kb on - strand, within ABID97_RS11505at 2375.143 kb on - strand, within ABID97_RS11505at 2375.460 kb on + strand, within ABID97_RS11505

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,374,026 - ABID97_RS11500 0.33 -0.2
2,374,056 - ABID97_RS11500 0.35 +0.1
2,374,155 - ABID97_RS11500 0.44 -1.0
2,374,511 + ABID97_RS11500 0.75 +0.1
2,374,512 - ABID97_RS11500 0.75 -0.5
2,374,568 + ABID97_RS11500 0.80 +0.3
2,374,658 + ABID97_RS11500 0.88 -1.4
2,374,715 + -0.0
2,374,716 - -0.2
2,374,716 - -0.4
2,375,142 + ABID97_RS11505 0.39 -0.3
2,375,142 + ABID97_RS11505 0.39 +0.5
2,375,143 - ABID97_RS11505 0.39 +0.0
2,375,143 - ABID97_RS11505 0.39 -0.0
2,375,460 + ABID97_RS11505 0.76 +0.4

Or see this region's nucleotide sequence