Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11425

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11420 and ABID97_RS11425 are separated by 97 nucleotidesABID97_RS11425 and ABID97_RS11430 overlap by 4 nucleotides ABID97_RS11420: ABID97_RS11420 - iron-containing redox enzyme family protein, at 2,356,664 to 2,357,396 _RS11420 ABID97_RS11425: ABID97_RS11425 - tripartite tricarboxylate transporter substrate binding protein, at 2,357,494 to 2,358,474 _RS11425 ABID97_RS11430: ABID97_RS11430 - aldehyde dehydrogenase family protein, at 2,358,471 to 2,359,910 _RS11430 Position (kb) 2357 2358 2359Strain fitness (log2 ratio) -1 0 1at 2356.578 kb on - strandat 2356.645 kb on - strandat 2356.675 kb on - strandat 2356.839 kb on - strand, within ABID97_RS11420at 2356.911 kb on - strand, within ABID97_RS11420at 2357.966 kb on - strand, within ABID97_RS11425at 2358.834 kb on + strand, within ABID97_RS11430

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,356,578 - -0.2
2,356,645 - +0.2
2,356,675 - +0.1
2,356,839 - ABID97_RS11420 0.24 +0.1
2,356,911 - ABID97_RS11420 0.34 +0.0
2,357,966 - ABID97_RS11425 0.48 -1.4
2,358,834 + ABID97_RS11430 0.25 -0.5

Or see this region's nucleotide sequence