Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11225 and ABID97_RS11230 are separated by 42 nucleotides ABID97_RS11230 and ABID97_RS11235 overlap by 23 nucleotides ABID97_RS11235 and ABID97_RS11240 are separated by 266 nucleotides
ABID97_RS11225: ABID97_RS11225 - glycerol dehydrogenase, at 2,321,020 to 2,322,153
_RS11225
ABID97_RS11230: ABID97_RS11230 - thioesterase family protein, at 2,322,196 to 2,322,669
_RS11230
ABID97_RS11235: ABID97_RS11235 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,322,647 to 2,324,089
_RS11235
ABID97_RS11240: ABID97_RS11240 - L-dopachrome tautomerase-related protein, at 2,324,356 to 2,325,570
_RS11240
Position (kb)
2322
2323
2324
2325 Strain fitness (log2 ratio)
-1
0
1 at 2322.198 kb on - strand at 2322.670 kb on - strand at 2322.684 kb on + strand at 2322.685 kb on - strand at 2322.843 kb on + strand, within ABID97_RS11235 at 2323.188 kb on + strand, within ABID97_RS11235 at 2323.188 kb on + strand, within ABID97_RS11235 at 2323.714 kb on - strand, within ABID97_RS11235 at 2324.597 kb on + strand, within ABID97_RS11240 at 2324.598 kb on - strand, within ABID97_RS11240 at 2324.598 kb on - strand, within ABID97_RS11240 at 2324.756 kb on + strand, within ABID97_RS11240 at 2324.978 kb on + strand, within ABID97_RS11240 at 2324.978 kb on + strand, within ABID97_RS11240 at 2325.082 kb on - strand, within ABID97_RS11240
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 2,322,198 - -0.7 2,322,670 - +0.9 2,322,684 + +0.1 2,322,685 - +0.3 2,322,843 + ABID97_RS11235 0.14 +0.1 2,323,188 + ABID97_RS11235 0.37 +0.4 2,323,188 + ABID97_RS11235 0.37 -0.8 2,323,714 - ABID97_RS11235 0.74 +0.1 2,324,597 + ABID97_RS11240 0.20 +0.1 2,324,598 - ABID97_RS11240 0.20 -0.3 2,324,598 - ABID97_RS11240 0.20 +0.4 2,324,756 + ABID97_RS11240 0.33 +0.5 2,324,978 + ABID97_RS11240 0.51 -0.2 2,324,978 + ABID97_RS11240 0.51 +0.0 2,325,082 - ABID97_RS11240 0.60 +0.3
Or see this region's nucleotide sequence