Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11235

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11225 and ABID97_RS11230 are separated by 42 nucleotidesABID97_RS11230 and ABID97_RS11235 overlap by 23 nucleotidesABID97_RS11235 and ABID97_RS11240 are separated by 266 nucleotides ABID97_RS11225: ABID97_RS11225 - glycerol dehydrogenase, at 2,321,020 to 2,322,153 _RS11225 ABID97_RS11230: ABID97_RS11230 - thioesterase family protein, at 2,322,196 to 2,322,669 _RS11230 ABID97_RS11235: ABID97_RS11235 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,322,647 to 2,324,089 _RS11235 ABID97_RS11240: ABID97_RS11240 - L-dopachrome tautomerase-related protein, at 2,324,356 to 2,325,570 _RS11240 Position (kb) 2322 2323 2324 2325Strain fitness (log2 ratio) -1 0 1at 2322.198 kb on - strandat 2322.670 kb on - strandat 2322.684 kb on + strandat 2322.685 kb on - strandat 2322.843 kb on + strand, within ABID97_RS11235at 2323.188 kb on + strand, within ABID97_RS11235at 2323.188 kb on + strand, within ABID97_RS11235at 2323.714 kb on - strand, within ABID97_RS11235at 2324.597 kb on + strand, within ABID97_RS11240at 2324.598 kb on - strand, within ABID97_RS11240at 2324.598 kb on - strand, within ABID97_RS11240at 2324.756 kb on + strand, within ABID97_RS11240at 2324.978 kb on + strand, within ABID97_RS11240at 2324.978 kb on + strand, within ABID97_RS11240at 2325.082 kb on - strand, within ABID97_RS11240

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,322,198 - -0.7
2,322,670 - +0.9
2,322,684 + +0.1
2,322,685 - +0.3
2,322,843 + ABID97_RS11235 0.14 +0.1
2,323,188 + ABID97_RS11235 0.37 +0.4
2,323,188 + ABID97_RS11235 0.37 -0.8
2,323,714 - ABID97_RS11235 0.74 +0.1
2,324,597 + ABID97_RS11240 0.20 +0.1
2,324,598 - ABID97_RS11240 0.20 -0.3
2,324,598 - ABID97_RS11240 0.20 +0.4
2,324,756 + ABID97_RS11240 0.33 +0.5
2,324,978 + ABID97_RS11240 0.51 -0.2
2,324,978 + ABID97_RS11240 0.51 +0.0
2,325,082 - ABID97_RS11240 0.60 +0.3

Or see this region's nucleotide sequence