Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09185 and ABID97_RS09190 are separated by 7 nucleotides ABID97_RS09190 and ABID97_RS09195 are separated by 3 nucleotides ABID97_RS09195 and ABID97_RS09200 are separated by 229 nucleotides
ABID97_RS09185: ABID97_RS09185 - M20/M25/M40 family metallo-hydrolase, at 1,932,197 to 1,933,483
_RS09185
ABID97_RS09190: ABID97_RS09190 - LysR substrate-binding domain-containing protein, at 1,933,491 to 1,934,393
_RS09190
ABID97_RS09195: ABID97_RS09195 - D-amino acid dehydrogenase, at 1,934,397 to 1,935,617
_RS09195
ABID97_RS09200: ABID97_RS09200 - transporter substrate-binding domain-containing protein, at 1,935,847 to 1,936,734
_RS09200
Position (kb) 1934
1935
1936 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1933.427 kb on + strand at 1933.683 kb on + strand, within ABID97_RS09190 at 1933.800 kb on + strand, within ABID97_RS09190 at 1933.800 kb on + strand, within ABID97_RS09190 at 1933.800 kb on + strand, within ABID97_RS09190 at 1933.801 kb on - strand, within ABID97_RS09190 at 1933.801 kb on - strand, within ABID97_RS09190 at 1934.175 kb on + strand, within ABID97_RS09190 at 1934.175 kb on + strand, within ABID97_RS09190 at 1934.175 kb on + strand, within ABID97_RS09190 at 1934.176 kb on - strand, within ABID97_RS09190 at 1934.176 kb on - strand, within ABID97_RS09190 at 1934.176 kb on - strand, within ABID97_RS09190 at 1935.049 kb on + strand, within ABID97_RS09195 at 1935.050 kb on - strand, within ABID97_RS09195 at 1935.199 kb on + strand, within ABID97_RS09195 at 1935.469 kb on + strand, within ABID97_RS09195 at 1935.469 kb on + strand, within ABID97_RS09195 at 1935.470 kb on - strand, within ABID97_RS09195 at 1935.475 kb on + strand, within ABID97_RS09195 at 1935.476 kb on - strand, within ABID97_RS09195 at 1935.660 kb on + strand at 1935.806 kb on + strand at 1935.989 kb on - strand, within ABID97_RS09200 at 1936.219 kb on + strand, within ABID97_RS09200 at 1936.336 kb on + strand, within ABID97_RS09200 at 1936.336 kb on + strand, within ABID97_RS09200 at 1936.337 kb on - strand, within ABID97_RS09200 at 1936.337 kb on - strand, within ABID97_RS09200
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 1,933,427 + -0.5 1,933,683 + ABID97_RS09190 0.21 +2.0 1,933,800 + ABID97_RS09190 0.34 -0.1 1,933,800 + ABID97_RS09190 0.34 -0.9 1,933,800 + ABID97_RS09190 0.34 -0.2 1,933,801 - ABID97_RS09190 0.34 +0.3 1,933,801 - ABID97_RS09190 0.34 -0.2 1,934,175 + ABID97_RS09190 0.76 +0.2 1,934,175 + ABID97_RS09190 0.76 +1.4 1,934,175 + ABID97_RS09190 0.76 +0.5 1,934,176 - ABID97_RS09190 0.76 -0.2 1,934,176 - ABID97_RS09190 0.76 -0.1 1,934,176 - ABID97_RS09190 0.76 +0.0 1,935,049 + ABID97_RS09195 0.53 -0.5 1,935,050 - ABID97_RS09195 0.53 -0.4 1,935,199 + ABID97_RS09195 0.66 +0.2 1,935,469 + ABID97_RS09195 0.88 -0.7 1,935,469 + ABID97_RS09195 0.88 -0.1 1,935,470 - ABID97_RS09195 0.88 -1.0 1,935,475 + ABID97_RS09195 0.88 -0.5 1,935,476 - ABID97_RS09195 0.88 -0.4 1,935,660 + +1.4 1,935,806 + -2.7 1,935,989 - ABID97_RS09200 0.16 +2.0 1,936,219 + ABID97_RS09200 0.42 -0.6 1,936,336 + ABID97_RS09200 0.55 +0.3 1,936,336 + ABID97_RS09200 0.55 +0.3 1,936,337 - ABID97_RS09200 0.55 +0.4 1,936,337 - ABID97_RS09200 0.55 +0.2
Or see this region's nucleotide sequence