Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09000 and ABID97_RS09005 are separated by 99 nucleotides ABID97_RS09005 and ABID97_RS09010 are separated by 80 nucleotides ABID97_RS09010 and ABID97_RS09015 are separated by 97 nucleotides
ABID97_RS09000: ABID97_RS09000 - type VI secretion system membrane subunit TssM, at 1,889,318 to 1,893,508
_RS09000
ABID97_RS09005: ABID97_RS09005 - TagK domain-containing protein, at 1,893,608 to 1,894,717
_RS09005
ABID97_RS09010: ABID97_RS09010 - type VI secretion system accessory protein TagJ, at 1,894,798 to 1,895,592
_RS09010
ABID97_RS09015: ABID97_RS09015 - type VI secretion system baseplate subunit TssE, at 1,895,690 to 1,896,187
_RS09015
Position (kb)
1893
1894
1895 Strain fitness (log2 ratio)
-1
0
1 at 1892.870 kb on + strand, within ABID97_RS09000 at 1893.060 kb on - strand, within ABID97_RS09000 at 1893.200 kb on + strand at 1893.201 kb on - strand at 1893.363 kb on + strand at 1893.363 kb on + strand at 1893.364 kb on - strand at 1893.600 kb on - strand at 1893.960 kb on + strand, within ABID97_RS09005 at 1894.350 kb on + strand, within ABID97_RS09005 at 1894.351 kb on - strand, within ABID97_RS09005 at 1894.707 kb on + strand at 1895.401 kb on + strand, within ABID97_RS09010 at 1895.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 1,892,870 + ABID97_RS09000 0.85 -1.0 1,893,060 - ABID97_RS09000 0.89 +0.1 1,893,200 + -0.8 1,893,201 - +0.6 1,893,363 + -0.3 1,893,363 + +0.3 1,893,364 - +0.5 1,893,600 - +1.3 1,893,960 + ABID97_RS09005 0.32 +0.7 1,894,350 + ABID97_RS09005 0.67 +0.1 1,894,351 - ABID97_RS09005 0.67 +0.1 1,894,707 + +0.3 1,895,401 + ABID97_RS09010 0.76 +0.7 1,895,701 - -0.3
Or see this region's nucleotide sequence