Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09005

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09000 and ABID97_RS09005 are separated by 99 nucleotidesABID97_RS09005 and ABID97_RS09010 are separated by 80 nucleotidesABID97_RS09010 and ABID97_RS09015 are separated by 97 nucleotides ABID97_RS09000: ABID97_RS09000 - type VI secretion system membrane subunit TssM, at 1,889,318 to 1,893,508 _RS09000 ABID97_RS09005: ABID97_RS09005 - TagK domain-containing protein, at 1,893,608 to 1,894,717 _RS09005 ABID97_RS09010: ABID97_RS09010 - type VI secretion system accessory protein TagJ, at 1,894,798 to 1,895,592 _RS09010 ABID97_RS09015: ABID97_RS09015 - type VI secretion system baseplate subunit TssE, at 1,895,690 to 1,896,187 _RS09015 Position (kb) 1893 1894 1895Strain fitness (log2 ratio) -1 0 1at 1892.870 kb on + strand, within ABID97_RS09000at 1893.060 kb on - strand, within ABID97_RS09000at 1893.200 kb on + strandat 1893.201 kb on - strandat 1893.363 kb on + strandat 1893.363 kb on + strandat 1893.364 kb on - strandat 1893.600 kb on - strandat 1893.960 kb on + strand, within ABID97_RS09005at 1894.350 kb on + strand, within ABID97_RS09005at 1894.351 kb on - strand, within ABID97_RS09005at 1894.707 kb on + strandat 1895.401 kb on + strand, within ABID97_RS09010at 1895.701 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,892,870 + ABID97_RS09000 0.85 -1.0
1,893,060 - ABID97_RS09000 0.89 +0.1
1,893,200 + -0.8
1,893,201 - +0.6
1,893,363 + -0.3
1,893,363 + +0.3
1,893,364 - +0.5
1,893,600 - +1.3
1,893,960 + ABID97_RS09005 0.32 +0.7
1,894,350 + ABID97_RS09005 0.67 +0.1
1,894,351 - ABID97_RS09005 0.67 +0.1
1,894,707 + +0.3
1,895,401 + ABID97_RS09010 0.76 +0.7
1,895,701 - -0.3

Or see this region's nucleotide sequence