Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07335

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07325 and ABID97_RS07330 are separated by 76 nucleotidesABID97_RS07330 and ABID97_RS07335 overlap by 4 nucleotidesABID97_RS07335 and ABID97_RS07340 overlap by 14 nucleotidesABID97_RS07340 and ABID97_RS07345 are separated by 38 nucleotidesABID97_RS07345 and ABID97_RS07350 are separated by 54 nucleotides ABID97_RS07325: ABID97_RS07325 - BON domain-containing protein, at 1,552,310 to 1,552,825 _RS07325 ABID97_RS07330: ABID97_RS07330 - ferritin-like domain-containing protein, at 1,552,902 to 1,553,462 _RS07330 ABID97_RS07335: ABID97_RS07335 - hypothetical protein, at 1,553,459 to 1,553,947 _RS07335 ABID97_RS07340: ABID97_RS07340 - hypothetical protein, at 1,553,934 to 1,554,317 _RS07340 ABID97_RS07345: ABID97_RS07345 - hypothetical protein, at 1,554,356 to 1,554,733 _RS07345 ABID97_RS07350: ABID97_RS07350 - DUF1328 domain-containing protein, at 1,554,788 to 1,554,952 _RS07350 Position (kb) 1553 1554Strain fitness (log2 ratio) -1 0 1at 1552.697 kb on - strand, within ABID97_RS07325at 1553.020 kb on + strand, within ABID97_RS07330at 1553.020 kb on + strand, within ABID97_RS07330at 1553.021 kb on - strand, within ABID97_RS07330at 1553.021 kb on - strand, within ABID97_RS07330at 1553.257 kb on + strand, within ABID97_RS07330at 1553.257 kb on + strand, within ABID97_RS07330at 1553.345 kb on - strand, within ABID97_RS07330at 1553.345 kb on - strand, within ABID97_RS07330at 1553.649 kb on + strand, within ABID97_RS07335at 1553.649 kb on + strand, within ABID97_RS07335at 1553.649 kb on + strand, within ABID97_RS07335at 1553.650 kb on - strand, within ABID97_RS07335at 1553.650 kb on - strand, within ABID97_RS07335at 1553.650 kb on - strand, within ABID97_RS07335at 1553.650 kb on - strand, within ABID97_RS07335at 1553.650 kb on - strand, within ABID97_RS07335at 1553.650 kb on - strand, within ABID97_RS07335at 1553.772 kb on + strand, within ABID97_RS07335at 1554.016 kb on + strand, within ABID97_RS07340at 1554.016 kb on + strand, within ABID97_RS07340at 1554.250 kb on + strand, within ABID97_RS07340at 1554.251 kb on - strand, within ABID97_RS07340at 1554.361 kb on - strandat 1554.648 kb on + strand, within ABID97_RS07345at 1554.648 kb on + strand, within ABID97_RS07345at 1554.649 kb on - strand, within ABID97_RS07345at 1554.780 kb on + strandat 1554.781 kb on - strandat 1554.870 kb on - strand, within ABID97_RS07350at 1554.942 kb on + strandat 1554.942 kb on + strandat 1554.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,552,697 - ABID97_RS07325 0.75 +0.2
1,553,020 + ABID97_RS07330 0.21 -0.8
1,553,020 + ABID97_RS07330 0.21 -0.1
1,553,021 - ABID97_RS07330 0.21 -0.8
1,553,021 - ABID97_RS07330 0.21 -0.1
1,553,257 + ABID97_RS07330 0.63 -0.0
1,553,257 + ABID97_RS07330 0.63 +0.3
1,553,345 - ABID97_RS07330 0.79 -0.3
1,553,345 - ABID97_RS07330 0.79 -0.4
1,553,649 + ABID97_RS07335 0.39 +1.0
1,553,649 + ABID97_RS07335 0.39 +0.1
1,553,649 + ABID97_RS07335 0.39 +0.2
1,553,650 - ABID97_RS07335 0.39 -0.1
1,553,650 - ABID97_RS07335 0.39 +0.1
1,553,650 - ABID97_RS07335 0.39 +0.3
1,553,650 - ABID97_RS07335 0.39 +0.2
1,553,650 - ABID97_RS07335 0.39 +0.2
1,553,650 - ABID97_RS07335 0.39 -0.4
1,553,772 + ABID97_RS07335 0.64 +0.2
1,554,016 + ABID97_RS07340 0.21 -0.4
1,554,016 + ABID97_RS07340 0.21 +0.8
1,554,250 + ABID97_RS07340 0.82 -0.7
1,554,251 - ABID97_RS07340 0.83 -0.9
1,554,361 - -0.7
1,554,648 + ABID97_RS07345 0.77 -0.6
1,554,648 + ABID97_RS07345 0.77 -0.2
1,554,649 - ABID97_RS07345 0.78 -0.5
1,554,780 + +1.2
1,554,781 - +0.0
1,554,870 - ABID97_RS07350 0.50 -1.7
1,554,942 + -0.1
1,554,942 + -0.2
1,554,943 - +0.1

Or see this region's nucleotide sequence