Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04725 and ABID97_RS04730 overlap by 8 nucleotides ABID97_RS04730 and ABID97_RS04735 are separated by 25 nucleotides
ABID97_RS04725: ABID97_RS04725 - hydroxymethylglutaryl-CoA lyase, at 984,612 to 985,550
_RS04725
ABID97_RS04730: ABID97_RS04730 - CaiB/BaiF CoA-transferase family protein, at 985,543 to 986,733
_RS04730
ABID97_RS04735: ABID97_RS04735 - LysR family transcriptional regulator, at 986,759 to 987,739
_RS04735
Position (kb) 985
986
987 Strain fitness (log2 ratio) -1
0
1 at 984.584 kb on + strand at 984.584 kb on + strand at 984.584 kb on + strand at 985.158 kb on + strand, within ABID97_RS04725 at 985.159 kb on - strand, within ABID97_RS04725 at 985.338 kb on + strand, within ABID97_RS04725 at 985.338 kb on + strand, within ABID97_RS04725 at 985.338 kb on + strand, within ABID97_RS04725 at 985.339 kb on - strand, within ABID97_RS04725 at 985.568 kb on - strand at 985.864 kb on + strand, within ABID97_RS04730 at 985.901 kb on - strand, within ABID97_RS04730 at 985.901 kb on - strand, within ABID97_RS04730 at 985.934 kb on - strand, within ABID97_RS04730 at 985.987 kb on + strand, within ABID97_RS04730 at 985.987 kb on + strand, within ABID97_RS04730 at 985.987 kb on + strand, within ABID97_RS04730 at 986.236 kb on + strand, within ABID97_RS04730 at 986.236 kb on + strand, within ABID97_RS04730 at 986.678 kb on - strand at 986.744 kb on + strand at 986.746 kb on + strand at 986.746 kb on + strand at 986.747 kb on - strand at 986.747 kb on - strand at 986.747 kb on - strand at 986.747 kb on - strand at 986.747 kb on - strand at 986.747 kb on - strand at 986.747 kb on - strand at 987.632 kb on + strand, within ABID97_RS04735
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 984,584 + -0.1 984,584 + +0.1 984,584 + -0.6 985,158 + ABID97_RS04725 0.58 -0.6 985,159 - ABID97_RS04725 0.58 -0.2 985,338 + ABID97_RS04725 0.77 +0.3 985,338 + ABID97_RS04725 0.77 +0.3 985,338 + ABID97_RS04725 0.77 -0.1 985,339 - ABID97_RS04725 0.77 -0.2 985,568 - -0.6 985,864 + ABID97_RS04730 0.27 -0.6 985,901 - ABID97_RS04730 0.30 -0.5 985,901 - ABID97_RS04730 0.30 -0.3 985,934 - ABID97_RS04730 0.33 +0.0 985,987 + ABID97_RS04730 0.37 +0.4 985,987 + ABID97_RS04730 0.37 -0.0 985,987 + ABID97_RS04730 0.37 -0.0 986,236 + ABID97_RS04730 0.58 +0.1 986,236 + ABID97_RS04730 0.58 +0.0 986,678 - +0.0 986,744 + +0.8 986,746 + +0.6 986,746 + -0.6 986,747 - -0.2 986,747 - +0.4 986,747 - +1.4 986,747 - +0.6 986,747 - +0.1 986,747 - -0.5 986,747 - -0.1 987,632 + ABID97_RS04735 0.89 -1.3
Or see this region's nucleotide sequence