Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02425

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02415 and ABID97_RS02420 overlap by 4 nucleotidesABID97_RS02420 and ABID97_RS02425 are separated by 97 nucleotidesABID97_RS02425 and ABID97_RS02430 are separated by 76 nucleotidesABID97_RS02430 and ABID97_RS02435 are separated by 19 nucleotides ABID97_RS02415: ABID97_RS02415 - M4 family metallopeptidase, at 485,526 to 486,596 _RS02415 ABID97_RS02420: ABID97_RS02420 - protealysin inhibitor emfourin, at 486,593 to 486,931 _RS02420 ABID97_RS02425: ABID97_RS02425 - putative quinol monooxygenase, at 487,029 to 487,337 _RS02425 ABID97_RS02430: ABID97_RS02430 - hypothetical protein, at 487,414 to 488,010 _RS02430 ABID97_RS02435: ABID97_RS02435 - hypothetical protein, at 488,030 to 488,626 _RS02435 Position (kb) 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 486.087 kb on + strand, within ABID97_RS02415at 486.264 kb on + strand, within ABID97_RS02415at 486.438 kb on + strand, within ABID97_RS02415at 486.439 kb on - strand, within ABID97_RS02415at 486.505 kb on + strandat 486.506 kb on - strandat 486.689 kb on + strand, within ABID97_RS02420at 486.689 kb on + strand, within ABID97_RS02420at 486.689 kb on + strand, within ABID97_RS02420at 486.690 kb on - strand, within ABID97_RS02420at 486.690 kb on - strand, within ABID97_RS02420at 486.690 kb on - strand, within ABID97_RS02420at 486.690 kb on - strand, within ABID97_RS02420at 486.809 kb on + strand, within ABID97_RS02420at 486.810 kb on - strand, within ABID97_RS02420at 486.810 kb on - strand, within ABID97_RS02420at 486.810 kb on - strand, within ABID97_RS02420at 486.986 kb on - strandat 486.986 kb on - strandat 486.986 kb on - strandat 487.199 kb on + strand, within ABID97_RS02425at 487.200 kb on - strand, within ABID97_RS02425at 487.200 kb on - strand, within ABID97_RS02425at 487.370 kb on - strandat 487.528 kb on + strand, within ABID97_RS02430at 487.540 kb on + strand, within ABID97_RS02430at 487.540 kb on + strand, within ABID97_RS02430at 487.540 kb on + strand, within ABID97_RS02430at 487.540 kb on + strand, within ABID97_RS02430at 487.541 kb on - strand, within ABID97_RS02430at 487.684 kb on + strand, within ABID97_RS02430at 487.685 kb on - strand, within ABID97_RS02430at 487.721 kb on + strand, within ABID97_RS02430at 487.722 kb on - strand, within ABID97_RS02430at 487.729 kb on + strand, within ABID97_RS02430at 487.729 kb on + strand, within ABID97_RS02430at 487.729 kb on + strand, within ABID97_RS02430at 487.867 kb on + strand, within ABID97_RS02430at 487.867 kb on + strand, within ABID97_RS02430at 487.897 kb on + strand, within ABID97_RS02430at 487.897 kb on + strand, within ABID97_RS02430at 487.898 kb on - strand, within ABID97_RS02430at 487.936 kb on + strand, within ABID97_RS02430at 487.972 kb on + strandat 487.973 kb on - strandat 488.177 kb on + strand, within ABID97_RS02435at 488.177 kb on + strand, within ABID97_RS02435at 488.177 kb on + strand, within ABID97_RS02435at 488.177 kb on + strand, within ABID97_RS02435at 488.178 kb on - strand, within ABID97_RS02435at 488.178 kb on - strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.246 kb on + strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.247 kb on - strand, within ABID97_RS02435at 488.249 kb on + strand, within ABID97_RS02435at 488.249 kb on + strand, within ABID97_RS02435at 488.250 kb on - strand, within ABID97_RS02435at 488.250 kb on - strand, within ABID97_RS02435at 488.301 kb on - strand, within ABID97_RS02435

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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486,087 + ABID97_RS02415 0.52 -0.4
486,264 + ABID97_RS02415 0.69 -0.1
486,438 + ABID97_RS02415 0.85 +0.6
486,439 - ABID97_RS02415 0.85 +0.0
486,505 + +0.3
486,506 - -0.5
486,689 + ABID97_RS02420 0.28 -1.8
486,689 + ABID97_RS02420 0.28 +0.5
486,689 + ABID97_RS02420 0.28 -3.7
486,690 - ABID97_RS02420 0.29 -2.9
486,690 - ABID97_RS02420 0.29 -2.0
486,690 - ABID97_RS02420 0.29 -0.1
486,690 - ABID97_RS02420 0.29 -3.1
486,809 + ABID97_RS02420 0.64 -2.7
486,810 - ABID97_RS02420 0.64 -0.1
486,810 - ABID97_RS02420 0.64 -2.5
486,810 - ABID97_RS02420 0.64 -1.2
486,986 - +0.3
486,986 - +0.5
486,986 - -0.1
487,199 + ABID97_RS02425 0.55 -0.7
487,200 - ABID97_RS02425 0.55 -0.6
487,200 - ABID97_RS02425 0.55 -0.3
487,370 - +1.3
487,528 + ABID97_RS02430 0.19 +0.1
487,540 + ABID97_RS02430 0.21 -0.3
487,540 + ABID97_RS02430 0.21 -0.7
487,540 + ABID97_RS02430 0.21 -0.9
487,540 + ABID97_RS02430 0.21 +0.3
487,541 - ABID97_RS02430 0.21 +0.5
487,684 + ABID97_RS02430 0.45 +0.3
487,685 - ABID97_RS02430 0.45 -0.6
487,721 + ABID97_RS02430 0.51 +0.0
487,722 - ABID97_RS02430 0.52 +0.2
487,729 + ABID97_RS02430 0.53 +1.0
487,729 + ABID97_RS02430 0.53 +0.8
487,729 + ABID97_RS02430 0.53 -0.1
487,867 + ABID97_RS02430 0.76 -0.4
487,867 + ABID97_RS02430 0.76 -0.3
487,897 + ABID97_RS02430 0.81 +0.6
487,897 + ABID97_RS02430 0.81 +0.2
487,898 - ABID97_RS02430 0.81 -0.2
487,936 + ABID97_RS02430 0.87 -0.7
487,972 + +0.1
487,973 - +0.8
488,177 + ABID97_RS02435 0.25 -0.5
488,177 + ABID97_RS02435 0.25 +1.1
488,177 + ABID97_RS02435 0.25 -0.2
488,177 + ABID97_RS02435 0.25 -0.4
488,178 - ABID97_RS02435 0.25 -0.1
488,178 - ABID97_RS02435 0.25 +1.3
488,246 + ABID97_RS02435 0.36 -0.2
488,246 + ABID97_RS02435 0.36 -1.5
488,246 + ABID97_RS02435 0.36 -0.5
488,246 + ABID97_RS02435 0.36 +0.3
488,246 + ABID97_RS02435 0.36 +0.8
488,246 + ABID97_RS02435 0.36 +0.2
488,246 + ABID97_RS02435 0.36 -0.2
488,246 + ABID97_RS02435 0.36 -0.1
488,246 + ABID97_RS02435 0.36 +0.2
488,246 + ABID97_RS02435 0.36 +1.5
488,247 - ABID97_RS02435 0.36 -0.5
488,247 - ABID97_RS02435 0.36 -0.6
488,247 - ABID97_RS02435 0.36 +0.1
488,247 - ABID97_RS02435 0.36 -0.1
488,247 - ABID97_RS02435 0.36 -0.4
488,247 - ABID97_RS02435 0.36 -0.1
488,247 - ABID97_RS02435 0.36 -0.5
488,247 - ABID97_RS02435 0.36 -0.0
488,247 - ABID97_RS02435 0.36 +0.2
488,247 - ABID97_RS02435 0.36 +0.9
488,247 - ABID97_RS02435 0.36 +2.1
488,247 - ABID97_RS02435 0.36 +0.0
488,247 - ABID97_RS02435 0.36 +0.3
488,249 + ABID97_RS02435 0.37 +0.1
488,249 + ABID97_RS02435 0.37 -0.6
488,250 - ABID97_RS02435 0.37 -0.4
488,250 - ABID97_RS02435 0.37 +0.2
488,301 - ABID97_RS02435 0.45 -0.0

Or see this region's nucleotide sequence