Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02065

Experiment: Adenine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS02060 and ABID97_RS02065 are separated by 34 nucleotidesABID97_RS02065 and ABID97_RS02070 are separated by 3 nucleotidesABID97_RS02070 and ABID97_RS02075 are separated by 9 nucleotides ABID97_RS02060: ABID97_RS02060 - TonB-dependent siderophore receptor, at 414,077 to 416,209 _RS02060 ABID97_RS02065: ABID97_RS02065 - YaeQ family protein, at 416,244 to 416,804 _RS02065 ABID97_RS02070: ABID97_RS02070 - DUF2007 domain-containing protein, at 416,808 to 417,113 _RS02070 ABID97_RS02075: ABID97_RS02075 - DUF3717 domain-containing protein, at 417,123 to 417,587 _RS02075 Position (kb) 416 417Strain fitness (log2 ratio) -1 0 1 2 3at 415.292 kb on + strand, within ABID97_RS02060at 415.292 kb on + strand, within ABID97_RS02060at 415.293 kb on - strand, within ABID97_RS02060at 415.293 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.460 kb on + strand, within ABID97_RS02060at 415.460 kb on + strand, within ABID97_RS02060at 415.461 kb on - strand, within ABID97_RS02060at 415.523 kb on + strand, within ABID97_RS02060at 415.524 kb on - strand, within ABID97_RS02060at 415.524 kb on - strandat 415.524 kb on - strand, within ABID97_RS02060at 415.578 kb on - strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.799 kb on + strand, within ABID97_RS02060at 415.805 kb on + strand, within ABID97_RS02060at 415.805 kb on + strand, within ABID97_RS02060at 415.805 kb on + strand, within ABID97_RS02060at 415.805 kb on + strand, within ABID97_RS02060at 415.806 kb on - strand, within ABID97_RS02060at 415.806 kb on - strand, within ABID97_RS02060at 415.806 kb on - strand, within ABID97_RS02060at 415.859 kb on + strand, within ABID97_RS02060at 415.860 kb on - strand, within ABID97_RS02060at 415.928 kb on + strand, within ABID97_RS02060at 415.979 kb on + strand, within ABID97_RS02060at 415.979 kb on + strand, within ABID97_RS02060at 415.979 kb on + strand, within ABID97_RS02060at 415.980 kb on - strand, within ABID97_RS02060at 416.027 kb on + strandat 416.124 kb on - strandat 416.124 kb on - strandat 416.124 kb on - strandat 416.127 kb on - strandat 416.159 kb on + strandat 416.159 kb on + strandat 416.160 kb on - strandat 416.160 kb on - strandat 416.183 kb on + strandat 416.184 kb on - strandat 416.184 kb on - strandat 416.229 kb on + strandat 416.229 kb on + strandat 416.230 kb on - strandat 416.230 kb on - strandat 416.230 kb on - strandat 416.230 kb on - strandat 416.308 kb on - strand, within ABID97_RS02065at 416.583 kb on + strand, within ABID97_RS02065at 416.583 kb on + strand, within ABID97_RS02065at 416.583 kb on + strand, within ABID97_RS02065at 416.584 kb on - strand, within ABID97_RS02065at 416.584 kb on - strand, within ABID97_RS02065at 416.584 kb on - strand, within ABID97_RS02065at 416.584 kb on - strand, within ABID97_RS02065at 416.661 kb on + strand, within ABID97_RS02065at 416.661 kb on + strand, within ABID97_RS02065at 416.662 kb on - strand, within ABID97_RS02065at 416.802 kb on + strandat 416.802 kb on + strandat 416.803 kb on - strandat 416.803 kb on - strandat 417.388 kb on + strand, within ABID97_RS02075at 417.388 kb on + strand, within ABID97_RS02075at 417.472 kb on + strand, within ABID97_RS02075at 417.473 kb on - strand, within ABID97_RS02075at 417.473 kb on - strand, within ABID97_RS02075at 417.473 kb on - strand, within ABID97_RS02075at 417.473 kb on - strand, within ABID97_RS02075at 417.619 kb on - strandat 417.619 kb on - strandat 417.619 kb on - strandat 417.619 kb on - strandat 417.619 kb on - strandat 417.652 kb on + strandat 417.783 kb on + strandat 417.784 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
remove
415,292 + ABID97_RS02060 0.57 +0.7
415,292 + ABID97_RS02060 0.57 +0.6
415,293 - ABID97_RS02060 0.57 +3.4
415,293 - ABID97_RS02060 0.57 +0.7
415,377 - ABID97_RS02060 0.61 -1.1
415,377 - ABID97_RS02060 0.61 +0.3
415,377 - ABID97_RS02060 0.61 +0.1
415,377 - ABID97_RS02060 0.61 +1.1
415,377 - ABID97_RS02060 0.61 -0.4
415,460 + ABID97_RS02060 0.65 +2.2
415,460 + ABID97_RS02060 0.65 +1.0
415,461 - ABID97_RS02060 0.65 +1.3
415,523 + ABID97_RS02060 0.68 +0.2
415,524 - ABID97_RS02060 0.68 -0.1
415,524 - +3.0
415,524 - ABID97_RS02060 0.68 -0.3
415,578 - ABID97_RS02060 0.70 +0.0
415,595 + ABID97_RS02060 0.71 +0.2
415,595 + ABID97_RS02060 0.71 +0.8
415,595 + ABID97_RS02060 0.71 -1.3
415,595 + ABID97_RS02060 0.71 +0.8
415,595 + ABID97_RS02060 0.71 -0.3
415,799 + ABID97_RS02060 0.81 -0.3
415,805 + ABID97_RS02060 0.81 +0.2
415,805 + ABID97_RS02060 0.81 -0.3
415,805 + ABID97_RS02060 0.81 +0.4
415,805 + ABID97_RS02060 0.81 +0.9
415,806 - ABID97_RS02060 0.81 -0.2
415,806 - ABID97_RS02060 0.81 -0.7
415,806 - ABID97_RS02060 0.81 -0.3
415,859 + ABID97_RS02060 0.84 +0.2
415,860 - ABID97_RS02060 0.84 -0.1
415,928 + ABID97_RS02060 0.87 +0.8
415,979 + ABID97_RS02060 0.89 -0.3
415,979 + ABID97_RS02060 0.89 +1.3
415,979 + ABID97_RS02060 0.89 +0.8
415,980 - ABID97_RS02060 0.89 -0.7
416,027 + +0.3
416,124 - -0.3
416,124 - -0.5
416,124 - +1.6
416,127 - +1.3
416,159 + +0.3
416,159 + -0.6
416,160 - +0.4
416,160 - +0.1
416,183 + +1.4
416,184 - +0.7
416,184 - +0.1
416,229 + -0.6
416,229 + +1.4
416,230 - +0.1
416,230 - -0.3
416,230 - -0.0
416,230 - -0.3
416,308 - ABID97_RS02065 0.11 -0.0
416,583 + ABID97_RS02065 0.60 +1.3
416,583 + ABID97_RS02065 0.60 -0.4
416,583 + ABID97_RS02065 0.60 -0.5
416,584 - ABID97_RS02065 0.61 -0.3
416,584 - ABID97_RS02065 0.61 -0.5
416,584 - ABID97_RS02065 0.61 +0.1
416,584 - ABID97_RS02065 0.61 -0.2
416,661 + ABID97_RS02065 0.74 +0.1
416,661 + ABID97_RS02065 0.74 +0.7
416,662 - ABID97_RS02065 0.75 +0.3
416,802 + -0.2
416,802 + -0.3
416,803 - -0.1
416,803 - -0.5
417,388 + ABID97_RS02075 0.57 +0.3
417,388 + ABID97_RS02075 0.57 +0.1
417,472 + ABID97_RS02075 0.75 -0.7
417,473 - ABID97_RS02075 0.75 -0.5
417,473 - ABID97_RS02075 0.75 -0.3
417,473 - ABID97_RS02075 0.75 +0.0
417,473 - ABID97_RS02075 0.75 +0.1
417,619 - -0.1
417,619 - -0.5
417,619 - +0.3
417,619 - +0.3
417,619 - +0.8
417,652 + -0.1
417,783 + -0.2
417,784 - +0.0

Or see this region's nucleotide sequence