Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00745

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00735 and ABID97_RS00740 are separated by 40 nucleotidesABID97_RS00740 and ABID97_RS00745 are separated by 51 nucleotidesABID97_RS00745 and ABID97_RS00750 are separated by 73 nucleotidesABID97_RS00750 and ABID97_RS00755 are separated by 13 nucleotides ABID97_RS00735: ABID97_RS00735 - LysR family transcriptional regulator, at 146,398 to 147,303 _RS00735 ABID97_RS00740: ABID97_RS00740 - dienelactone hydrolase family protein, at 147,344 to 148,027 _RS00740 ABID97_RS00745: ABID97_RS00745 - 2-hydroxychromene-2-carboxylate isomerase, at 148,079 to 148,684 _RS00745 ABID97_RS00750: ABID97_RS00750 - SDR family oxidoreductase, at 148,758 to 149,504 _RS00750 ABID97_RS00755: ABID97_RS00755 - MarC family protein, at 149,518 to 150,159 _RS00755 Position (kb) 148 149Strain fitness (log2 ratio) -1 0 1at 147.110 kb on - strand, within ABID97_RS00735at 147.110 kb on - strand, within ABID97_RS00735at 147.110 kb on - strand, within ABID97_RS00735at 147.110 kb on - strand, within ABID97_RS00735at 147.110 kb on - strand, within ABID97_RS00735at 147.260 kb on + strandat 147.260 kb on + strandat 147.260 kb on + strandat 147.330 kb on - strandat 147.330 kb on - strandat 147.411 kb on + strandat 147.411 kb on + strandat 147.411 kb on + strandat 147.412 kb on - strandat 147.412 kb on - strandat 147.454 kb on - strand, within ABID97_RS00740at 147.454 kb on - strand, within ABID97_RS00740at 147.454 kb on - strand, within ABID97_RS00740at 147.600 kb on + strand, within ABID97_RS00740at 147.600 kb on + strand, within ABID97_RS00740at 147.603 kb on + strand, within ABID97_RS00740at 147.603 kb on + strand, within ABID97_RS00740at 147.604 kb on - strand, within ABID97_RS00740at 147.604 kb on - strand, within ABID97_RS00740at 147.673 kb on - strand, within ABID97_RS00740at 147.709 kb on - strand, within ABID97_RS00740at 147.807 kb on + strand, within ABID97_RS00740at 147.807 kb on + strand, within ABID97_RS00740at 147.865 kb on - strand, within ABID97_RS00740at 147.865 kb on - strand, within ABID97_RS00740at 147.880 kb on - strand, within ABID97_RS00740at 147.975 kb on + strandat 147.975 kb on + strandat 147.976 kb on - strandat 147.976 kb on - strandat 147.976 kb on - strandat 148.136 kb on + strandat 148.137 kb on - strandat 148.137 kb on - strandat 148.155 kb on + strand, within ABID97_RS00745at 148.155 kb on + strand, within ABID97_RS00745at 148.155 kb on + strand, within ABID97_RS00745at 148.155 kb on + strand, within ABID97_RS00745at 148.155 kb on + strand, within ABID97_RS00745at 148.155 kb on + strand, within ABID97_RS00745at 148.156 kb on - strand, within ABID97_RS00745at 148.156 kb on - strand, within ABID97_RS00745at 148.156 kb on - strand, within ABID97_RS00745at 148.156 kb on - strand, within ABID97_RS00745at 148.156 kb on - strand, within ABID97_RS00745at 148.200 kb on + strand, within ABID97_RS00745at 148.200 kb on + strand, within ABID97_RS00745at 148.201 kb on - strand, within ABID97_RS00745at 148.201 kb on - strand, within ABID97_RS00745at 148.209 kb on + strand, within ABID97_RS00745at 148.635 kb on + strandat 148.635 kb on + strandat 148.635 kb on + strandat 148.662 kb on + strandat 148.662 kb on + strandat 148.663 kb on - strandat 148.663 kb on - strandat 148.663 kb on - strandat 148.663 kb on - strandat 148.663 kb on - strandat 148.704 kb on + strandat 148.704 kb on + strandat 148.704 kb on + strandat 148.705 kb on - strandat 148.705 kb on - strandat 148.705 kb on - strandat 148.705 kb on - strandat 148.705 kb on - strandat 148.724 kb on - strandat 148.768 kb on + strandat 148.768 kb on + strandat 148.855 kb on - strand, within ABID97_RS00750at 148.855 kb on - strand, within ABID97_RS00750at 149.177 kb on + strand, within ABID97_RS00750at 149.178 kb on - strand, within ABID97_RS00750at 149.217 kb on + strand, within ABID97_RS00750at 149.218 kb on - strand, within ABID97_RS00750at 149.463 kb on + strandat 149.464 kb on - strandat 149.464 kb on - strandat 149.464 kb on - strandat 149.502 kb on + strandat 149.511 kb on + strandat 149.594 kb on - strand, within ABID97_RS00755at 149.605 kb on + strand, within ABID97_RS00755

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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147,110 - ABID97_RS00735 0.79 -0.8
147,110 - ABID97_RS00735 0.79 +1.1
147,110 - ABID97_RS00735 0.79 +0.7
147,110 - ABID97_RS00735 0.79 -0.5
147,110 - ABID97_RS00735 0.79 -0.8
147,260 + +0.6
147,260 + -0.0
147,260 + +0.0
147,330 - -0.2
147,330 - +0.3
147,411 + +0.2
147,411 + -0.4
147,411 + -0.7
147,412 - -0.0
147,412 - -0.3
147,454 - ABID97_RS00740 0.16 +0.4
147,454 - ABID97_RS00740 0.16 -1.5
147,454 - ABID97_RS00740 0.16 -0.6
147,600 + ABID97_RS00740 0.37 -1.3
147,600 + ABID97_RS00740 0.37 -1.0
147,603 + ABID97_RS00740 0.38 -0.6
147,603 + ABID97_RS00740 0.38 +0.2
147,604 - ABID97_RS00740 0.38 -0.4
147,604 - ABID97_RS00740 0.38 -0.1
147,673 - ABID97_RS00740 0.48 -0.8
147,709 - ABID97_RS00740 0.53 -0.0
147,807 + ABID97_RS00740 0.68 +1.3
147,807 + ABID97_RS00740 0.68 -0.2
147,865 - ABID97_RS00740 0.76 -0.1
147,865 - ABID97_RS00740 0.76 -0.5
147,880 - ABID97_RS00740 0.78 -0.2
147,975 + -0.7
147,975 + -0.1
147,976 - -0.4
147,976 - -0.4
147,976 - -0.1
148,136 + +0.5
148,137 - -0.3
148,137 - -0.2
148,155 + ABID97_RS00745 0.13 -0.2
148,155 + ABID97_RS00745 0.13 -0.7
148,155 + ABID97_RS00745 0.13 -0.3
148,155 + ABID97_RS00745 0.13 -0.1
148,155 + ABID97_RS00745 0.13 -1.5
148,155 + ABID97_RS00745 0.13 -0.4
148,156 - ABID97_RS00745 0.13 +0.3
148,156 - ABID97_RS00745 0.13 -0.4
148,156 - ABID97_RS00745 0.13 +1.0
148,156 - ABID97_RS00745 0.13 -0.1
148,156 - ABID97_RS00745 0.13 -0.6
148,200 + ABID97_RS00745 0.20 -0.1
148,200 + ABID97_RS00745 0.20 +0.2
148,201 - ABID97_RS00745 0.20 -0.4
148,201 - ABID97_RS00745 0.20 -0.5
148,209 + ABID97_RS00745 0.21 -0.3
148,635 + +0.2
148,635 + -0.4
148,635 + -0.4
148,662 + -0.1
148,662 + +1.6
148,663 - +1.6
148,663 - +0.8
148,663 - +0.6
148,663 - -0.3
148,663 - -0.0
148,704 + -1.2
148,704 + +0.2
148,704 + -0.8
148,705 - +0.2
148,705 - +0.5
148,705 - -0.4
148,705 - -0.3
148,705 - -0.4
148,724 - -1.0
148,768 + -0.5
148,768 + -0.5
148,855 - ABID97_RS00750 0.13 +0.0
148,855 - ABID97_RS00750 0.13 -0.5
149,177 + ABID97_RS00750 0.56 -0.2
149,178 - ABID97_RS00750 0.56 +1.3
149,217 + ABID97_RS00750 0.61 -0.3
149,218 - ABID97_RS00750 0.62 -0.3
149,463 + -0.9
149,464 - -0.2
149,464 - -0.5
149,464 - +0.0
149,502 + -0.0
149,511 + +0.4
149,594 - ABID97_RS00755 0.12 -0.3
149,605 + ABID97_RS00755 0.14 -1.2

Or see this region's nucleotide sequence