Experiment: Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjA and dnaC are separated by 48 nucleotides dnaC and dnaT are separated by 2 nucleotides dnaT and yjjB are separated by 106 nucleotides yjjB and yjjP overlap by 10 nucleotides
b4360: yjjA - putative glycoprotein/receptor (VIMSS), at 4,597,718 to 4,598,212
yjjA
b4361: dnaC - DNA biosynthesis protein (NCBI), at 4,598,261 to 4,598,998
dnaC
b4362: dnaT - primosomal protein I (NCBI), at 4,599,001 to 4,599,540
dnaT
b4363: yjjB - conserved inner membrane protein (RefSeq), at 4,599,647 to 4,600,120
yjjB
b4364: yjjP - putative structural protein (VIMSS), at 4,600,111 to 4,600,881
yjjP
Position (kb)
4599
4600 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4598.117 kb on - strand, within yjjA at 4598.220 kb on - strand at 4598.220 kb on - strand at 4598.235 kb on - strand at 4598.240 kb on - strand at 4598.240 kb on - strand at 4599.536 kb on + strand at 4599.561 kb on - strand at 4599.589 kb on + strand at 4599.593 kb on + strand at 4599.609 kb on - strand at 4599.609 kb on - strand at 4599.609 kb on - strand at 4599.619 kb on + strand at 4599.681 kb on - strand at 4599.761 kb on - strand, within yjjB at 4599.761 kb on - strand, within yjjB at 4599.831 kb on + strand, within yjjB at 4599.837 kb on - strand, within yjjB at 4599.873 kb on + strand, within yjjB at 4599.873 kb on + strand, within yjjB at 4599.874 kb on + strand, within yjjB at 4599.874 kb on + strand, within yjjB at 4599.941 kb on + strand, within yjjB at 4600.053 kb on - strand, within yjjB at 4600.138 kb on - strand at 4600.198 kb on + strand, within yjjP at 4600.208 kb on - strand, within yjjP at 4600.211 kb on + strand, within yjjP at 4600.219 kb on - strand, within yjjP at 4600.219 kb on - strand, within yjjP at 4600.273 kb on + strand, within yjjP at 4600.273 kb on + strand, within yjjP at 4600.455 kb on + strand, within yjjP at 4600.485 kb on - strand, within yjjP at 4600.485 kb on - strand, within yjjP at 4600.538 kb on + strand, within yjjP at 4600.538 kb on + strand, within yjjP
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.025 mg/ml remove 4,598,117 - yjjA b4360 0.81 +0.6 4,598,220 - +0.9 4,598,220 - -0.2 4,598,235 - +0.4 4,598,240 - -0.0 4,598,240 - -0.0 4,599,536 + +1.0 4,599,561 - -1.8 4,599,589 + -2.9 4,599,593 + +0.1 4,599,609 - -1.3 4,599,609 - -0.6 4,599,609 - -1.4 4,599,619 + -1.3 4,599,681 - +1.1 4,599,761 - yjjB b4363 0.24 -0.6 4,599,761 - yjjB b4363 0.24 +0.4 4,599,831 + yjjB b4363 0.39 +0.6 4,599,837 - yjjB b4363 0.40 +0.1 4,599,873 + yjjB b4363 0.48 -1.6 4,599,873 + yjjB b4363 0.48 -0.6 4,599,874 + yjjB b4363 0.48 +0.8 4,599,874 + yjjB b4363 0.48 +2.6 4,599,941 + yjjB b4363 0.62 -0.5 4,600,053 - yjjB b4363 0.86 -1.2 4,600,138 - +0.4 4,600,198 + yjjP b4364 0.11 -1.0 4,600,208 - yjjP b4364 0.13 -0.5 4,600,211 + yjjP b4364 0.13 +0.0 4,600,219 - yjjP b4364 0.14 -2.5 4,600,219 - yjjP b4364 0.14 -0.4 4,600,273 + yjjP b4364 0.21 -0.4 4,600,273 + yjjP b4364 0.21 +2.6 4,600,455 + yjjP b4364 0.45 +0.2 4,600,485 - yjjP b4364 0.49 -0.6 4,600,485 - yjjP b4364 0.49 -0.2 4,600,538 + yjjP b4364 0.55 +1.0 4,600,538 + yjjP b4364 0.55 +0.1
Or see this region's nucleotide sequence