Strain Fitness in Escherichia coli BW25113 around b1749
Experiment: Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,829,492 | - | astC | b1748 | 0.58 | -0.2 |
1,829,492 | - | astC | b1748 | 0.58 | +0.9 |
1,829,911 | - | -0.4 | |||
1,829,911 | - | +0.3 | |||
1,829,941 | - | -0.1 | |||
1,830,075 | + | -0.2 | |||
1,830,078 | + | -0.8 | |||
1,830,078 | + | -0.7 | |||
1,830,093 | - | +1.1 | |||
1,830,238 | - | -0.7 | |||
1,830,238 | - | +0.3 | |||
1,830,375 | + | +0.9 | |||
1,830,422 | - | -0.2 | |||
1,830,640 | - | xthA | b1749 | 0.23 | -0.7 |
1,830,904 | + | xthA | b1749 | 0.56 | +0.3 |
1,830,904 | + | xthA | b1749 | 0.56 | +0.3 |
1,830,979 | + | xthA | b1749 | 0.65 | -0.9 |
1,831,114 | + | xthA | b1749 | 0.82 | -1.3 |
1,831,114 | + | xthA | b1749 | 0.82 | -2.7 |
1,831,119 | + | xthA | b1749 | 0.83 | -1.0 |
1,831,119 | + | xthA | b1749 | 0.83 | +0.0 |
1,831,243 | - | -1.5 | |||
1,831,243 | - | +0.1 | |||
1,831,277 | - | +0.3 | |||
1,831,277 | - | +0.3 | |||
1,831,351 | + | +0.3 | |||
1,831,351 | + | +1.9 | |||
1,831,504 | - | ydjX | b1750 | 0.11 | -0.0 |
1,831,535 | - | ydjX | b1750 | 0.15 | -0.2 |
1,831,535 | - | ydjX | b1750 | 0.15 | +0.9 |
1,831,539 | - | ydjX | b1750 | 0.16 | -0.2 |
1,831,642 | + | ydjX | b1750 | 0.31 | +0.7 |
1,831,658 | + | ydjX | b1750 | 0.33 | +0.3 |
1,831,679 | - | ydjX | b1750 | 0.36 | -0.1 |
1,831,737 | - | ydjX | b1750 | 0.44 | +0.2 |
1,831,737 | - | ydjX | b1750 | 0.44 | +1.2 |
1,831,766 | + | ydjX | b1750 | 0.48 | -1.5 |
1,831,766 | + | ydjX | b1750 | 0.48 | -0.0 |
1,831,775 | + | ydjX | b1750 | 0.49 | +0.3 |
1,831,782 | + | ydjX | b1750 | 0.50 | +0.3 |
1,831,827 | - | ydjX | b1750 | 0.57 | -0.7 |
1,831,834 | + | ydjX | b1750 | 0.58 | +0.8 |
1,831,992 | - | ydjX | b1750 | 0.80 | +0.7 |
1,832,016 | + | ydjX | b1750 | 0.83 | -0.1 |
1,832,016 | + | ydjX | b1750 | 0.83 | -0.1 |
1,832,084 | - | +0.2 | |||
1,832,113 | - | -1.1 | |||
1,832,113 | - | -0.7 | |||
1,832,187 | + | -0.2 |
Or see this region's nucleotide sequence