Experiment: m.b. Carbenicillin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3271 and Echvi_3272 are separated by 144 nucleotides Echvi_3272 and Echvi_3273 are separated by 333 nucleotides
Echvi_3271: Echvi_3271 - 3-oxoacid CoA-transferase, B subunit, at 3,876,285 to 3,876,941
_3271
Echvi_3272: Echvi_3272 - 3-oxoacid CoA-transferase, A subunit, at 3,877,086 to 3,877,778
_3272
Echvi_3273: Echvi_3273 - riboflavin kinase/FMN adenylyltransferase, at 3,878,112 to 3,879,041
_3273
Position (kb)
3877
3878 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3876.115 kb on + strand at 3876.184 kb on - strand at 3876.184 kb on - strand at 3876.190 kb on - strand at 3876.192 kb on + strand at 3876.192 kb on + strand at 3876.193 kb on - strand at 3876.193 kb on - strand at 3876.207 kb on + strand at 3876.214 kb on + strand at 3876.215 kb on - strand at 3876.215 kb on - strand at 3876.215 kb on - strand at 3876.215 kb on - strand at 3876.215 kb on - strand at 3876.217 kb on + strand at 3876.217 kb on + strand at 3876.218 kb on - strand at 3876.265 kb on + strand at 3876.265 kb on + strand at 3876.266 kb on - strand at 3876.266 kb on - strand at 3876.277 kb on + strand at 3876.278 kb on - strand at 3876.354 kb on + strand, within Echvi_3271 at 3876.416 kb on - strand, within Echvi_3271 at 3876.819 kb on + strand, within Echvi_3271 at 3876.820 kb on - strand, within Echvi_3271 at 3876.820 kb on - strand, within Echvi_3271 at 3876.820 kb on - strand, within Echvi_3271 at 3876.841 kb on + strand, within Echvi_3271 at 3876.841 kb on + strand, within Echvi_3271 at 3876.842 kb on - strand, within Echvi_3271 at 3876.842 kb on - strand, within Echvi_3271 at 3876.842 kb on - strand, within Echvi_3271 at 3876.867 kb on + strand, within Echvi_3271 at 3876.970 kb on - strand at 3876.978 kb on + strand at 3876.983 kb on + strand at 3876.983 kb on + strand at 3876.997 kb on - strand at 3877.147 kb on - strand at 3877.223 kb on + strand, within Echvi_3272 at 3877.223 kb on + strand, within Echvi_3272 at 3877.276 kb on + strand, within Echvi_3272 at 3877.276 kb on + strand at 3877.354 kb on + strand, within Echvi_3272 at 3877.547 kb on - strand, within Echvi_3272 at 3877.713 kb on + strand at 3877.770 kb on - strand at 3877.779 kb on - strand at 3877.792 kb on - strand at 3877.975 kb on + strand at 3877.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml remove 3,876,115 + -1.3 3,876,184 - +1.3 3,876,184 - -0.7 3,876,190 - -1.3 3,876,192 + -0.0 3,876,192 + -0.6 3,876,193 - -0.6 3,876,193 - -1.6 3,876,207 + +1.3 3,876,214 + -0.7 3,876,215 - +2.3 3,876,215 - +0.0 3,876,215 - +1.6 3,876,215 - +0.5 3,876,215 - +0.3 3,876,217 + -0.3 3,876,217 + +0.5 3,876,218 - -1.5 3,876,265 + -0.0 3,876,265 + +0.4 3,876,266 - +0.6 3,876,266 - -0.6 3,876,277 + -1.2 3,876,278 - -0.3 3,876,354 + Echvi_3271 0.11 +0.2 3,876,416 - Echvi_3271 0.20 +0.4 3,876,819 + Echvi_3271 0.81 -0.1 3,876,820 - Echvi_3271 0.81 -0.5 3,876,820 - Echvi_3271 0.81 -0.0 3,876,820 - Echvi_3271 0.81 +0.3 3,876,841 + Echvi_3271 0.85 +0.6 3,876,841 + Echvi_3271 0.85 +0.0 3,876,842 - Echvi_3271 0.85 -0.5 3,876,842 - Echvi_3271 0.85 -0.3 3,876,842 - Echvi_3271 0.85 -0.4 3,876,867 + Echvi_3271 0.89 +0.3 3,876,970 - -0.4 3,876,978 + +0.1 3,876,983 + -0.7 3,876,983 + -2.4 3,876,997 - -0.4 3,877,147 - -1.0 3,877,223 + Echvi_3272 0.20 -0.5 3,877,223 + Echvi_3272 0.20 -1.1 3,877,276 + Echvi_3272 0.27 +0.3 3,877,276 + -0.4 3,877,354 + Echvi_3272 0.39 -0.7 3,877,547 - Echvi_3272 0.67 -0.3 3,877,713 + +0.5 3,877,770 - -1.8 3,877,779 - +1.1 3,877,792 - +1.9 3,877,975 + +0.2 3,877,976 - +0.0
Or see this region's nucleotide sequence