Experiment: m.b. Carbenicillin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3104 and Echvi_3105 are separated by 24 nucleotides Echvi_3105 and Echvi_3106 are separated by 256 nucleotides
Echvi_3104: Echvi_3104 - SusD family., at 3,708,632 to 3,710,308
_3104
Echvi_3105: Echvi_3105 - TonB-linked outer membrane protein, SusC/RagA family, at 3,710,333 to 3,713,350
_3105
Echvi_3106: Echvi_3106 - Sugar phosphate permease, at 3,713,607 to 3,714,932
_3106
Position (kb)
3710
3711
3712
3713
3714 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3709.399 kb on - strand, within Echvi_3104 at 3709.468 kb on + strand, within Echvi_3104 at 3709.469 kb on - strand, within Echvi_3104 at 3709.545 kb on + strand, within Echvi_3104 at 3709.629 kb on + strand, within Echvi_3104 at 3709.629 kb on + strand, within Echvi_3104 at 3709.735 kb on + strand, within Echvi_3104 at 3709.746 kb on + strand, within Echvi_3104 at 3709.746 kb on + strand, within Echvi_3104 at 3709.746 kb on + strand, within Echvi_3104 at 3709.746 kb on + strand, within Echvi_3104 at 3709.747 kb on - strand, within Echvi_3104 at 3709.747 kb on - strand, within Echvi_3104 at 3709.747 kb on - strand, within Echvi_3104 at 3709.803 kb on - strand, within Echvi_3104 at 3709.881 kb on + strand, within Echvi_3104 at 3709.893 kb on - strand, within Echvi_3104 at 3709.893 kb on - strand, within Echvi_3104 at 3709.942 kb on + strand, within Echvi_3104 at 3709.943 kb on - strand, within Echvi_3104 at 3709.943 kb on - strand, within Echvi_3104 at 3709.976 kb on + strand, within Echvi_3104 at 3709.976 kb on + strand, within Echvi_3104 at 3709.976 kb on + strand, within Echvi_3104 at 3709.976 kb on + strand, within Echvi_3104 at 3709.977 kb on - strand, within Echvi_3104 at 3709.977 kb on - strand, within Echvi_3104 at 3709.985 kb on + strand, within Echvi_3104 at 3709.986 kb on - strand, within Echvi_3104 at 3710.017 kb on + strand, within Echvi_3104 at 3710.017 kb on + strand, within Echvi_3104 at 3710.017 kb on + strand, within Echvi_3104 at 3710.017 kb on + strand, within Echvi_3104 at 3710.017 kb on + strand, within Echvi_3104 at 3710.018 kb on - strand, within Echvi_3104 at 3710.020 kb on - strand, within Echvi_3104 at 3710.061 kb on + strand, within Echvi_3104 at 3710.062 kb on - strand, within Echvi_3104 at 3710.109 kb on + strand, within Echvi_3104 at 3710.110 kb on - strand, within Echvi_3104 at 3710.110 kb on - strand, within Echvi_3104 at 3710.128 kb on + strand, within Echvi_3104 at 3710.128 kb on + strand, within Echvi_3104 at 3710.129 kb on - strand, within Echvi_3104 at 3710.130 kb on + strand, within Echvi_3104 at 3710.130 kb on + strand, within Echvi_3104 at 3710.130 kb on + strand, within Echvi_3104 at 3710.130 kb on + strand, within Echvi_3104 at 3710.167 kb on + strand at 3710.168 kb on - strand at 3710.168 kb on - strand at 3710.168 kb on - strand at 3710.168 kb on - strand at 3710.168 kb on - strand at 3710.176 kb on - strand at 3710.291 kb on - strand at 3710.291 kb on - strand at 3710.293 kb on - strand at 3710.293 kb on - strand at 3710.296 kb on + strand at 3710.297 kb on - strand at 3710.297 kb on - strand at 3710.309 kb on - strand at 3710.348 kb on + strand at 3710.348 kb on + strand at 3710.348 kb on + strand at 3710.359 kb on + strand at 3710.383 kb on + strand at 3710.393 kb on + strand at 3710.393 kb on + strand at 3710.394 kb on - strand at 3710.394 kb on - strand at 3710.431 kb on - strand at 3710.495 kb on - strand at 3710.502 kb on + strand at 3710.510 kb on + strand at 3710.510 kb on + strand at 3710.522 kb on - strand at 3710.608 kb on + strand at 3710.608 kb on + strand at 3710.608 kb on + strand at 3710.619 kb on + strand at 3710.619 kb on + strand at 3710.620 kb on - strand at 3710.620 kb on - strand at 3710.777 kb on - strand, within Echvi_3105 at 3710.777 kb on - strand, within Echvi_3105 at 3710.786 kb on + strand, within Echvi_3105 at 3710.812 kb on + strand, within Echvi_3105 at 3710.813 kb on - strand, within Echvi_3105 at 3710.813 kb on - strand, within Echvi_3105 at 3710.890 kb on + strand, within Echvi_3105 at 3710.982 kb on + strand, within Echvi_3105 at 3710.988 kb on + strand, within Echvi_3105 at 3710.989 kb on - strand, within Echvi_3105 at 3710.989 kb on - strand, within Echvi_3105 at 3711.031 kb on + strand, within Echvi_3105 at 3711.031 kb on + strand, within Echvi_3105 at 3711.031 kb on + strand, within Echvi_3105 at 3711.082 kb on + strand, within Echvi_3105 at 3711.109 kb on + strand, within Echvi_3105 at 3711.109 kb on + strand, within Echvi_3105 at 3711.110 kb on - strand, within Echvi_3105 at 3711.110 kb on - strand, within Echvi_3105 at 3711.116 kb on + strand, within Echvi_3105 at 3711.116 kb on + strand, within Echvi_3105 at 3711.117 kb on - strand, within Echvi_3105 at 3711.132 kb on - strand, within Echvi_3105 at 3711.168 kb on - strand, within Echvi_3105 at 3711.168 kb on - strand, within Echvi_3105 at 3711.168 kb on - strand, within Echvi_3105 at 3711.178 kb on + strand, within Echvi_3105 at 3711.178 kb on + strand, within Echvi_3105 at 3711.178 kb on + strand, within Echvi_3105 at 3711.178 kb on + strand, within Echvi_3105 at 3711.178 kb on + strand, within Echvi_3105 at 3711.179 kb on - strand, within Echvi_3105 at 3711.179 kb on - strand, within Echvi_3105 at 3711.247 kb on - strand, within Echvi_3105 at 3711.247 kb on - strand, within Echvi_3105 at 3711.249 kb on + strand, within Echvi_3105 at 3711.250 kb on - strand, within Echvi_3105 at 3711.278 kb on + strand, within Echvi_3105 at 3711.278 kb on + strand, within Echvi_3105 at 3711.305 kb on + strand, within Echvi_3105 at 3711.310 kb on + strand, within Echvi_3105 at 3711.310 kb on + strand, within Echvi_3105 at 3711.313 kb on + strand, within Echvi_3105 at 3711.350 kb on - strand, within Echvi_3105 at 3711.390 kb on + strand, within Echvi_3105 at 3711.390 kb on + strand, within Echvi_3105 at 3711.390 kb on + strand, within Echvi_3105 at 3711.390 kb on + strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.391 kb on - strand, within Echvi_3105 at 3711.456 kb on + strand, within Echvi_3105 at 3711.467 kb on + strand at 3711.467 kb on + strand, within Echvi_3105 at 3711.596 kb on + strand, within Echvi_3105 at 3711.596 kb on + strand, within Echvi_3105 at 3711.597 kb on - strand, within Echvi_3105 at 3711.601 kb on + strand, within Echvi_3105 at 3711.616 kb on - strand, within Echvi_3105 at 3711.633 kb on + strand, within Echvi_3105 at 3711.638 kb on - strand, within Echvi_3105 at 3711.723 kb on + strand, within Echvi_3105 at 3711.812 kb on - strand, within Echvi_3105 at 3711.844 kb on - strand, within Echvi_3105 at 3711.844 kb on - strand, within Echvi_3105 at 3711.848 kb on - strand, within Echvi_3105 at 3711.867 kb on + strand, within Echvi_3105 at 3711.868 kb on - strand, within Echvi_3105 at 3711.871 kb on + strand, within Echvi_3105 at 3711.871 kb on + strand, within Echvi_3105 at 3711.872 kb on - strand, within Echvi_3105 at 3711.899 kb on + strand, within Echvi_3105 at 3712.004 kb on + strand, within Echvi_3105 at 3712.023 kb on + strand, within Echvi_3105 at 3712.027 kb on + strand, within Echvi_3105 at 3712.028 kb on - strand, within Echvi_3105 at 3712.028 kb on - strand, within Echvi_3105 at 3712.045 kb on - strand, within Echvi_3105 at 3712.129 kb on + strand, within Echvi_3105 at 3712.230 kb on - strand, within Echvi_3105 at 3712.235 kb on - strand, within Echvi_3105 at 3712.256 kb on - strand, within Echvi_3105 at 3712.267 kb on + strand, within Echvi_3105 at 3712.291 kb on + strand, within Echvi_3105 at 3712.293 kb on + strand, within Echvi_3105 at 3712.293 kb on + strand, within Echvi_3105 at 3712.302 kb on + strand, within Echvi_3105 at 3712.303 kb on - strand, within Echvi_3105 at 3712.434 kb on + strand, within Echvi_3105 at 3712.473 kb on - strand, within Echvi_3105 at 3712.557 kb on + strand, within Echvi_3105 at 3712.620 kb on + strand, within Echvi_3105 at 3712.620 kb on + strand, within Echvi_3105 at 3712.621 kb on - strand, within Echvi_3105 at 3712.621 kb on - strand, within Echvi_3105 at 3712.747 kb on + strand, within Echvi_3105 at 3712.748 kb on - strand, within Echvi_3105 at 3712.748 kb on - strand, within Echvi_3105 at 3712.853 kb on + strand, within Echvi_3105 at 3712.970 kb on + strand, within Echvi_3105 at 3713.163 kb on + strand at 3713.231 kb on - strand at 3713.287 kb on + strand at 3713.350 kb on + strand at 3713.355 kb on - strand at 3713.452 kb on + strand at 3713.624 kb on - strand at 3713.628 kb on - strand at 3713.628 kb on - strand at 3713.679 kb on - strand at 3713.684 kb on + strand at 3713.687 kb on + strand at 3713.688 kb on - strand at 3713.691 kb on + strand at 3713.691 kb on + strand at 3713.691 kb on + strand at 3713.691 kb on + strand at 3713.691 kb on + strand at 3713.692 kb on - strand at 3713.692 kb on - strand at 3713.905 kb on - strand, within Echvi_3106 at 3713.921 kb on + strand, within Echvi_3106 at 3713.921 kb on + strand, within Echvi_3106 at 3713.921 kb on + strand, within Echvi_3106 at 3713.922 kb on - strand, within Echvi_3106 at 3713.975 kb on + strand, within Echvi_3106 at 3713.976 kb on - strand, within Echvi_3106 at 3714.106 kb on + strand, within Echvi_3106 at 3714.143 kb on - strand, within Echvi_3106 at 3714.146 kb on - strand, within Echvi_3106 at 3714.275 kb on + strand, within Echvi_3106 at 3714.275 kb on + strand, within Echvi_3106
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml remove 3,709,399 - Echvi_3104 0.46 -1.1 3,709,468 + Echvi_3104 0.50 -1.8 3,709,469 - Echvi_3104 0.50 -0.7 3,709,545 + Echvi_3104 0.54 +0.1 3,709,629 + Echvi_3104 0.59 +1.0 3,709,629 + Echvi_3104 0.59 -0.1 3,709,735 + Echvi_3104 0.66 +0.3 3,709,746 + Echvi_3104 0.66 -1.2 3,709,746 + Echvi_3104 0.66 +0.7 3,709,746 + Echvi_3104 0.66 +0.3 3,709,746 + Echvi_3104 0.66 +0.3 3,709,747 - Echvi_3104 0.66 -0.7 3,709,747 - Echvi_3104 0.66 +0.6 3,709,747 - Echvi_3104 0.66 +0.4 3,709,803 - Echvi_3104 0.70 -0.2 3,709,881 + Echvi_3104 0.74 +0.2 3,709,893 - Echvi_3104 0.75 -0.0 3,709,893 - Echvi_3104 0.75 +0.9 3,709,942 + Echvi_3104 0.78 +0.1 3,709,943 - Echvi_3104 0.78 +0.1 3,709,943 - Echvi_3104 0.78 +1.6 3,709,976 + Echvi_3104 0.80 +0.5 3,709,976 + Echvi_3104 0.80 +0.4 3,709,976 + Echvi_3104 0.80 +0.6 3,709,976 + Echvi_3104 0.80 -0.7 3,709,977 - Echvi_3104 0.80 -1.3 3,709,977 - Echvi_3104 0.80 +0.5 3,709,985 + Echvi_3104 0.81 +0.2 3,709,986 - Echvi_3104 0.81 +1.9 3,710,017 + Echvi_3104 0.83 -2.4 3,710,017 + Echvi_3104 0.83 +0.1 3,710,017 + Echvi_3104 0.83 +0.6 3,710,017 + Echvi_3104 0.83 +0.4 3,710,017 + Echvi_3104 0.83 -0.5 3,710,018 - Echvi_3104 0.83 +0.2 3,710,020 - Echvi_3104 0.83 +0.1 3,710,061 + Echvi_3104 0.85 +0.1 3,710,062 - Echvi_3104 0.85 -0.4 3,710,109 + Echvi_3104 0.88 +0.0 3,710,110 - Echvi_3104 0.88 -0.1 3,710,110 - Echvi_3104 0.88 +0.9 3,710,128 + Echvi_3104 0.89 -1.2 3,710,128 + Echvi_3104 0.89 -0.9 3,710,129 - Echvi_3104 0.89 +1.1 3,710,130 + Echvi_3104 0.89 -0.8 3,710,130 + Echvi_3104 0.89 -0.4 3,710,130 + Echvi_3104 0.89 -0.9 3,710,130 + Echvi_3104 0.89 +0.3 3,710,167 + +0.4 3,710,168 - +0.4 3,710,168 - -0.3 3,710,168 - +0.2 3,710,168 - +0.6 3,710,168 - +1.6 3,710,176 - -0.5 3,710,291 - +0.2 3,710,291 - -0.2 3,710,293 - +0.9 3,710,293 - -0.2 3,710,296 + +0.5 3,710,297 - -0.6 3,710,297 - +1.0 3,710,309 - +0.4 3,710,348 + +0.4 3,710,348 + +1.4 3,710,348 + +0.5 3,710,359 + -0.7 3,710,383 + -0.6 3,710,393 + -0.3 3,710,393 + -0.4 3,710,394 - -0.5 3,710,394 - +0.3 3,710,431 - -0.2 3,710,495 - +0.8 3,710,502 + +0.6 3,710,510 + -0.9 3,710,510 + +0.6 3,710,522 - +0.6 3,710,608 + -0.3 3,710,608 + +1.2 3,710,608 + +1.2 3,710,619 + +0.0 3,710,619 + -0.4 3,710,620 - -0.4 3,710,620 - +0.4 3,710,777 - Echvi_3105 0.15 +1.4 3,710,777 - Echvi_3105 0.15 +1.6 3,710,786 + Echvi_3105 0.15 +0.1 3,710,812 + Echvi_3105 0.16 +1.2 3,710,813 - Echvi_3105 0.16 -2.2 3,710,813 - Echvi_3105 0.16 +0.7 3,710,890 + Echvi_3105 0.18 +0.3 3,710,982 + Echvi_3105 0.22 -0.8 3,710,988 + Echvi_3105 0.22 -0.7 3,710,989 - Echvi_3105 0.22 +1.4 3,710,989 - Echvi_3105 0.22 -0.2 3,711,031 + Echvi_3105 0.23 -0.2 3,711,031 + Echvi_3105 0.23 -0.4 3,711,031 + Echvi_3105 0.23 +0.6 3,711,082 + Echvi_3105 0.25 -0.4 3,711,109 + Echvi_3105 0.26 -0.9 3,711,109 + Echvi_3105 0.26 -0.6 3,711,110 - Echvi_3105 0.26 -0.9 3,711,110 - Echvi_3105 0.26 -0.1 3,711,116 + Echvi_3105 0.26 +0.1 3,711,116 + Echvi_3105 0.26 +0.4 3,711,117 - Echvi_3105 0.26 +0.5 3,711,132 - Echvi_3105 0.26 +0.6 3,711,168 - Echvi_3105 0.28 +0.1 3,711,168 - Echvi_3105 0.28 +0.5 3,711,168 - Echvi_3105 0.28 +0.1 3,711,178 + Echvi_3105 0.28 -0.1 3,711,178 + Echvi_3105 0.28 +0.6 3,711,178 + Echvi_3105 0.28 -0.6 3,711,178 + Echvi_3105 0.28 +0.6 3,711,178 + Echvi_3105 0.28 -0.1 3,711,179 - Echvi_3105 0.28 -0.1 3,711,179 - Echvi_3105 0.28 -0.7 3,711,247 - Echvi_3105 0.30 +0.2 3,711,247 - Echvi_3105 0.30 +1.3 3,711,249 + Echvi_3105 0.30 +1.0 3,711,250 - Echvi_3105 0.30 -1.5 3,711,278 + Echvi_3105 0.31 +0.2 3,711,278 + Echvi_3105 0.31 +0.6 3,711,305 + Echvi_3105 0.32 +0.2 3,711,310 + Echvi_3105 0.32 +1.6 3,711,310 + Echvi_3105 0.32 +0.3 3,711,313 + Echvi_3105 0.32 -0.5 3,711,350 - Echvi_3105 0.34 -0.7 3,711,390 + Echvi_3105 0.35 +1.0 3,711,390 + Echvi_3105 0.35 +0.8 3,711,390 + Echvi_3105 0.35 -1.7 3,711,390 + Echvi_3105 0.35 +0.1 3,711,391 - Echvi_3105 0.35 +0.4 3,711,391 - Echvi_3105 0.35 -0.9 3,711,391 - Echvi_3105 0.35 -0.6 3,711,391 - Echvi_3105 0.35 +0.3 3,711,391 - Echvi_3105 0.35 +1.6 3,711,391 - Echvi_3105 0.35 +0.4 3,711,391 - Echvi_3105 0.35 -1.2 3,711,391 - Echvi_3105 0.35 -0.0 3,711,391 - Echvi_3105 0.35 -0.1 3,711,456 + Echvi_3105 0.37 -1.2 3,711,467 + +2.6 3,711,467 + Echvi_3105 0.38 +2.1 3,711,596 + Echvi_3105 0.42 +0.7 3,711,596 + Echvi_3105 0.42 +1.6 3,711,597 - Echvi_3105 0.42 +0.6 3,711,601 + Echvi_3105 0.42 -0.8 3,711,616 - Echvi_3105 0.43 +0.1 3,711,633 + Echvi_3105 0.43 +0.9 3,711,638 - Echvi_3105 0.43 -1.1 3,711,723 + Echvi_3105 0.46 +0.6 3,711,812 - Echvi_3105 0.49 +0.1 3,711,844 - Echvi_3105 0.50 -0.6 3,711,844 - Echvi_3105 0.50 -0.1 3,711,848 - Echvi_3105 0.50 +1.9 3,711,867 + Echvi_3105 0.51 -2.4 3,711,868 - Echvi_3105 0.51 -0.1 3,711,871 + Echvi_3105 0.51 -0.3 3,711,871 + Echvi_3105 0.51 +0.3 3,711,872 - Echvi_3105 0.51 -0.1 3,711,899 + Echvi_3105 0.52 +0.2 3,712,004 + Echvi_3105 0.55 +0.8 3,712,023 + Echvi_3105 0.56 -0.9 3,712,027 + Echvi_3105 0.56 +0.1 3,712,028 - Echvi_3105 0.56 +0.3 3,712,028 - Echvi_3105 0.56 -0.4 3,712,045 - Echvi_3105 0.57 -3.1 3,712,129 + Echvi_3105 0.60 -0.6 3,712,230 - Echvi_3105 0.63 -0.6 3,712,235 - Echvi_3105 0.63 +1.6 3,712,256 - Echvi_3105 0.64 +0.6 3,712,267 + Echvi_3105 0.64 -0.1 3,712,291 + Echvi_3105 0.65 -0.4 3,712,293 + Echvi_3105 0.65 +0.2 3,712,293 + Echvi_3105 0.65 -0.3 3,712,302 + Echvi_3105 0.65 +1.2 3,712,303 - Echvi_3105 0.65 -0.3 3,712,434 + Echvi_3105 0.70 +1.0 3,712,473 - Echvi_3105 0.71 +0.2 3,712,557 + Echvi_3105 0.74 +0.2 3,712,620 + Echvi_3105 0.76 +0.1 3,712,620 + Echvi_3105 0.76 -0.1 3,712,621 - Echvi_3105 0.76 +1.4 3,712,621 - Echvi_3105 0.76 -1.0 3,712,747 + Echvi_3105 0.80 -0.4 3,712,748 - Echvi_3105 0.80 -0.3 3,712,748 - Echvi_3105 0.80 +1.0 3,712,853 + Echvi_3105 0.83 -0.2 3,712,970 + Echvi_3105 0.87 +0.4 3,713,163 + +0.2 3,713,231 - -0.9 3,713,287 + +0.5 3,713,350 + +0.3 3,713,355 - -0.6 3,713,452 + -0.2 3,713,624 - +0.2 3,713,628 - +0.3 3,713,628 - -0.2 3,713,679 - +1.2 3,713,684 + -0.6 3,713,687 + +0.3 3,713,688 - -0.7 3,713,691 + -0.4 3,713,691 + +0.5 3,713,691 + -0.4 3,713,691 + +0.6 3,713,691 + +0.2 3,713,692 - -1.1 3,713,692 - -0.6 3,713,905 - Echvi_3106 0.22 -0.3 3,713,921 + Echvi_3106 0.24 +0.6 3,713,921 + Echvi_3106 0.24 +1.1 3,713,921 + Echvi_3106 0.24 -1.7 3,713,922 - Echvi_3106 0.24 +0.9 3,713,975 + Echvi_3106 0.28 +1.0 3,713,976 - Echvi_3106 0.28 +0.6 3,714,106 + Echvi_3106 0.38 +0.8 3,714,143 - Echvi_3106 0.40 -0.9 3,714,146 - Echvi_3106 0.41 +2.0 3,714,275 + Echvi_3106 0.50 -0.0 3,714,275 + Echvi_3106 0.50 -1.7
Or see this region's nucleotide sequence