Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2989

Experiment: m.b. Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2988 and Echvi_2989 are separated by 71 nucleotidesEchvi_2989 and Echvi_2990 are separated by 5 nucleotides Echvi_2988: Echvi_2988 - tryptophanyl-tRNA synthetase, at 3,571,298 to 3,572,272 _2988 Echvi_2989: Echvi_2989 - Protein of unknown function (DUF1573)., at 3,572,344 to 3,573,441 _2989 Echvi_2990: Echvi_2990 - Acyl-CoA dehydrogenases, at 3,573,447 to 3,574,655 _2990 Position (kb) 3572 3573 3574Strain fitness (log2 ratio) -2 -1 0 1at 3572.334 kb on - strandat 3572.364 kb on - strandat 3572.369 kb on + strandat 3572.369 kb on + strandat 3572.369 kb on + strandat 3572.370 kb on - strandat 3572.396 kb on + strandat 3572.399 kb on + strandat 3572.399 kb on + strandat 3572.568 kb on + strand, within Echvi_2989at 3572.605 kb on - strand, within Echvi_2989at 3572.718 kb on - strand, within Echvi_2989at 3572.718 kb on - strand, within Echvi_2989at 3572.718 kb on - strand, within Echvi_2989at 3572.758 kb on + strand, within Echvi_2989at 3572.758 kb on + strand, within Echvi_2989at 3572.767 kb on + strand, within Echvi_2989at 3572.768 kb on - strand, within Echvi_2989at 3572.768 kb on - strand, within Echvi_2989at 3572.769 kb on + strand, within Echvi_2989at 3572.770 kb on - strand, within Echvi_2989at 3572.770 kb on - strand, within Echvi_2989at 3572.790 kb on + strand, within Echvi_2989at 3572.796 kb on + strand, within Echvi_2989at 3572.803 kb on - strand, within Echvi_2989at 3572.820 kb on - strand, within Echvi_2989at 3572.820 kb on - strand, within Echvi_2989at 3572.820 kb on - strand, within Echvi_2989at 3572.820 kb on - strand, within Echvi_2989at 3572.820 kb on - strand, within Echvi_2989at 3572.898 kb on + strand, within Echvi_2989at 3572.899 kb on - strand, within Echvi_2989at 3572.925 kb on + strand, within Echvi_2989at 3572.952 kb on + strand, within Echvi_2989at 3573.006 kb on - strand, within Echvi_2989at 3573.034 kb on - strand, within Echvi_2989at 3573.094 kb on + strand, within Echvi_2989at 3573.146 kb on + strand, within Echvi_2989at 3573.207 kb on + strand, within Echvi_2989at 3573.208 kb on - strand, within Echvi_2989at 3573.208 kb on - strand, within Echvi_2989at 3573.208 kb on - strand, within Echvi_2989at 3573.238 kb on - strand, within Echvi_2989at 3573.270 kb on + strand, within Echvi_2989at 3573.270 kb on + strand, within Echvi_2989at 3573.270 kb on + strand, within Echvi_2989at 3573.270 kb on + strand, within Echvi_2989at 3573.270 kb on + strand, within Echvi_2989at 3573.270 kb on + strand, within Echvi_2989at 3573.271 kb on - strand, within Echvi_2989at 3573.271 kb on - strand, within Echvi_2989at 3573.292 kb on + strand, within Echvi_2989at 3573.366 kb on + strandat 3573.367 kb on - strandat 3573.398 kb on + strandat 3573.423 kb on + strandat 3573.465 kb on - strandat 3573.517 kb on + strandat 3573.517 kb on + strandat 3573.518 kb on - strandat 3573.545 kb on + strandat 3573.546 kb on - strandat 3573.635 kb on + strand, within Echvi_2990at 3573.636 kb on - strand, within Echvi_2990at 3573.687 kb on + strand, within Echvi_2990at 3573.688 kb on - strand, within Echvi_2990at 3573.696 kb on + strand, within Echvi_2990at 3573.762 kb on + strand, within Echvi_2990at 3573.762 kb on + strand, within Echvi_2990at 3573.762 kb on + strand, within Echvi_2990at 3573.779 kb on + strand, within Echvi_2990at 3573.780 kb on - strand, within Echvi_2990at 3573.829 kb on + strand, within Echvi_2990at 3573.830 kb on - strand, within Echvi_2990at 3573.998 kb on + strand, within Echvi_2990at 3573.999 kb on - strand, within Echvi_2990at 3573.999 kb on - strand, within Echvi_2990at 3573.999 kb on - strand, within Echvi_2990at 3574.020 kb on - strand, within Echvi_2990at 3574.046 kb on + strand, within Echvi_2990at 3574.047 kb on - strand, within Echvi_2990at 3574.047 kb on - strand, within Echvi_2990at 3574.047 kb on - strand, within Echvi_2990at 3574.083 kb on + strand, within Echvi_2990at 3574.083 kb on + strand, within Echvi_2990at 3574.087 kb on - strand, within Echvi_2990at 3574.087 kb on - strand, within Echvi_2990at 3574.093 kb on - strand, within Echvi_2990at 3574.093 kb on - strand, within Echvi_2990at 3574.112 kb on + strand, within Echvi_2990at 3574.137 kb on + strand, within Echvi_2990at 3574.138 kb on - strand, within Echvi_2990at 3574.141 kb on - strand, within Echvi_2990at 3574.144 kb on + strand, within Echvi_2990at 3574.388 kb on + strand, within Echvi_2990at 3574.388 kb on + strand, within Echvi_2990at 3574.389 kb on - strand, within Echvi_2990at 3574.389 kb on - strand, within Echvi_2990at 3574.389 kb on - strand, within Echvi_2990at 3574.390 kb on + strand, within Echvi_2990at 3574.391 kb on - strand, within Echvi_2990at 3574.412 kb on - strand, within Echvi_2990at 3574.412 kb on - strand, within Echvi_2990

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
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3,572,334 - -0.7
3,572,364 - +0.2
3,572,369 + +0.8
3,572,369 + -0.0
3,572,369 + -0.3
3,572,370 - +0.4
3,572,396 + +0.8
3,572,399 + -0.7
3,572,399 + +0.8
3,572,568 + Echvi_2989 0.20 +1.6
3,572,605 - Echvi_2989 0.24 +0.1
3,572,718 - Echvi_2989 0.34 +1.5
3,572,718 - Echvi_2989 0.34 +1.0
3,572,718 - Echvi_2989 0.34 +0.9
3,572,758 + Echvi_2989 0.38 -1.0
3,572,758 + Echvi_2989 0.38 +0.3
3,572,767 + Echvi_2989 0.39 -0.0
3,572,768 - Echvi_2989 0.39 -0.9
3,572,768 - Echvi_2989 0.39 +0.2
3,572,769 + Echvi_2989 0.39 -0.2
3,572,770 - Echvi_2989 0.39 +0.3
3,572,770 - Echvi_2989 0.39 +1.3
3,572,790 + Echvi_2989 0.41 +0.4
3,572,796 + Echvi_2989 0.41 +1.4
3,572,803 - Echvi_2989 0.42 +0.1
3,572,820 - Echvi_2989 0.43 +1.6
3,572,820 - Echvi_2989 0.43 +0.1
3,572,820 - Echvi_2989 0.43 +1.2
3,572,820 - Echvi_2989 0.43 -0.1
3,572,820 - Echvi_2989 0.43 +0.0
3,572,898 + Echvi_2989 0.50 +0.3
3,572,899 - Echvi_2989 0.51 -0.2
3,572,925 + Echvi_2989 0.53 +1.1
3,572,952 + Echvi_2989 0.55 +0.8
3,573,006 - Echvi_2989 0.60 +0.5
3,573,034 - Echvi_2989 0.63 +1.1
3,573,094 + Echvi_2989 0.68 -0.9
3,573,146 + Echvi_2989 0.73 +0.3
3,573,207 + Echvi_2989 0.79 -0.0
3,573,208 - Echvi_2989 0.79 -0.0
3,573,208 - Echvi_2989 0.79 +0.8
3,573,208 - Echvi_2989 0.79 +0.6
3,573,238 - Echvi_2989 0.81 -0.1
3,573,270 + Echvi_2989 0.84 +0.2
3,573,270 + Echvi_2989 0.84 +0.4
3,573,270 + Echvi_2989 0.84 +0.7
3,573,270 + Echvi_2989 0.84 +0.7
3,573,270 + Echvi_2989 0.84 +0.6
3,573,270 + Echvi_2989 0.84 +0.3
3,573,271 - Echvi_2989 0.84 +0.8
3,573,271 - Echvi_2989 0.84 +0.6
3,573,292 + Echvi_2989 0.86 +0.7
3,573,366 + -0.0
3,573,367 - -0.1
3,573,398 + -1.5
3,573,423 + +1.0
3,573,465 - +0.7
3,573,517 + +0.1
3,573,517 + +0.8
3,573,518 - -1.2
3,573,545 + +0.6
3,573,546 - +0.0
3,573,635 + Echvi_2990 0.16 +0.6
3,573,636 - Echvi_2990 0.16 -0.2
3,573,687 + Echvi_2990 0.20 +1.2
3,573,688 - Echvi_2990 0.20 -0.7
3,573,696 + Echvi_2990 0.21 -0.3
3,573,762 + Echvi_2990 0.26 -0.5
3,573,762 + Echvi_2990 0.26 -0.9
3,573,762 + Echvi_2990 0.26 +0.4
3,573,779 + Echvi_2990 0.27 +0.1
3,573,780 - Echvi_2990 0.28 -1.6
3,573,829 + Echvi_2990 0.32 -1.4
3,573,830 - Echvi_2990 0.32 -0.2
3,573,998 + Echvi_2990 0.46 -0.1
3,573,999 - Echvi_2990 0.46 +0.2
3,573,999 - Echvi_2990 0.46 +1.1
3,573,999 - Echvi_2990 0.46 -1.7
3,574,020 - Echvi_2990 0.47 +0.4
3,574,046 + Echvi_2990 0.50 +0.6
3,574,047 - Echvi_2990 0.50 -1.8
3,574,047 - Echvi_2990 0.50 +0.3
3,574,047 - Echvi_2990 0.50 -0.4
3,574,083 + Echvi_2990 0.53 -0.5
3,574,083 + Echvi_2990 0.53 +0.7
3,574,087 - Echvi_2990 0.53 +0.6
3,574,087 - Echvi_2990 0.53 -0.9
3,574,093 - Echvi_2990 0.53 +0.9
3,574,093 - Echvi_2990 0.53 -0.6
3,574,112 + Echvi_2990 0.55 +0.2
3,574,137 + Echvi_2990 0.57 -0.0
3,574,138 - Echvi_2990 0.57 -0.6
3,574,141 - Echvi_2990 0.57 -0.4
3,574,144 + Echvi_2990 0.58 +0.5
3,574,388 + Echvi_2990 0.78 +0.4
3,574,388 + Echvi_2990 0.78 +0.8
3,574,389 - Echvi_2990 0.78 -0.9
3,574,389 - Echvi_2990 0.78 -0.0
3,574,389 - Echvi_2990 0.78 +0.2
3,574,390 + Echvi_2990 0.78 -1.4
3,574,391 - Echvi_2990 0.78 +0.2
3,574,412 - Echvi_2990 0.80 +0.6
3,574,412 - Echvi_2990 0.80 -0.4

Or see this region's nucleotide sequence