Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2229

Experiment: m.b. Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2228 and Echvi_2229 are separated by 114 nucleotidesEchvi_2229 and Echvi_2230 are separated by 166 nucleotides Echvi_2228: Echvi_2228 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 2,652,700 to 2,653,362 _2228 Echvi_2229: Echvi_2229 - Lysophospholipase L1 and related esterases, at 2,653,477 to 2,654,226 _2229 Echvi_2230: Echvi_2230 - Uncharacterized proteins, homologs of microcin C7 resistance protein MccF, at 2,654,393 to 2,655,445 _2230 Position (kb) 2653 2654 2655Strain fitness (log2 ratio) -2 -1 0 1 2at 2652.506 kb on + strandat 2652.528 kb on + strandat 2652.529 kb on - strandat 2652.541 kb on - strandat 2652.545 kb on - strandat 2652.586 kb on - strandat 2652.633 kb on + strandat 2652.634 kb on - strandat 2652.650 kb on + strandat 2652.650 kb on + strandat 2652.685 kb on - strandat 2652.750 kb on - strandat 2652.750 kb on - strandat 2652.757 kb on - strandat 2652.803 kb on + strand, within Echvi_2228at 2652.804 kb on - strand, within Echvi_2228at 2652.864 kb on - strand, within Echvi_2228at 2652.894 kb on + strand, within Echvi_2228at 2652.895 kb on - strand, within Echvi_2228at 2652.895 kb on - strand, within Echvi_2228at 2652.940 kb on + strand, within Echvi_2228at 2652.941 kb on - strand, within Echvi_2228at 2652.953 kb on - strand, within Echvi_2228at 2652.954 kb on + strand, within Echvi_2228at 2652.954 kb on + strand, within Echvi_2228at 2652.954 kb on + strand, within Echvi_2228at 2652.955 kb on - strand, within Echvi_2228at 2652.955 kb on - strand, within Echvi_2228at 2653.094 kb on - strand, within Echvi_2228at 2653.124 kb on + strand, within Echvi_2228at 2653.124 kb on + strand, within Echvi_2228at 2653.125 kb on - strand, within Echvi_2228at 2653.125 kb on - strand, within Echvi_2228at 2653.125 kb on - strand, within Echvi_2228at 2653.130 kb on + strand, within Echvi_2228at 2653.131 kb on - strand, within Echvi_2228at 2653.131 kb on - strand, within Echvi_2228at 2653.155 kb on + strand, within Echvi_2228at 2653.156 kb on - strand, within Echvi_2228at 2653.197 kb on + strand, within Echvi_2228at 2653.300 kb on + strandat 2653.301 kb on - strandat 2653.321 kb on - strandat 2653.331 kb on - strandat 2653.345 kb on - strandat 2653.396 kb on - strandat 2653.396 kb on - strandat 2653.485 kb on + strandat 2653.486 kb on - strandat 2653.602 kb on + strand, within Echvi_2229at 2653.602 kb on + strand, within Echvi_2229at 2653.602 kb on + strand, within Echvi_2229at 2653.603 kb on - strand, within Echvi_2229at 2653.659 kb on - strand, within Echvi_2229at 2653.659 kb on - strand, within Echvi_2229at 2653.693 kb on + strand, within Echvi_2229at 2653.761 kb on + strand, within Echvi_2229at 2653.762 kb on - strand, within Echvi_2229at 2653.762 kb on - strand, within Echvi_2229at 2653.795 kb on + strand, within Echvi_2229at 2653.840 kb on - strand, within Echvi_2229at 2653.842 kb on - strand, within Echvi_2229at 2653.881 kb on - strand, within Echvi_2229at 2653.881 kb on - strand, within Echvi_2229at 2653.974 kb on + strand, within Echvi_2229at 2653.975 kb on - strand, within Echvi_2229at 2654.015 kb on + strand, within Echvi_2229at 2654.051 kb on + strand, within Echvi_2229at 2654.052 kb on - strand, within Echvi_2229at 2654.072 kb on + strand, within Echvi_2229at 2654.073 kb on - strand, within Echvi_2229at 2654.232 kb on + strandat 2654.233 kb on - strandat 2654.233 kb on - strandat 2654.233 kb on - strandat 2654.233 kb on - strandat 2654.236 kb on + strandat 2654.236 kb on + strandat 2654.286 kb on + strandat 2654.331 kb on + strandat 2654.331 kb on + strandat 2654.332 kb on - strandat 2654.352 kb on + strandat 2654.353 kb on - strandat 2654.378 kb on + strandat 2654.384 kb on + strandat 2654.384 kb on + strandat 2654.536 kb on + strand, within Echvi_2230at 2654.536 kb on + strand, within Echvi_2230at 2654.537 kb on - strand, within Echvi_2230at 2654.538 kb on + strand, within Echvi_2230at 2654.614 kb on + strand, within Echvi_2230at 2654.614 kb on + strand, within Echvi_2230at 2654.625 kb on - strand, within Echvi_2230at 2654.657 kb on - strand, within Echvi_2230at 2654.717 kb on - strand, within Echvi_2230at 2654.717 kb on - strand, within Echvi_2230at 2654.839 kb on + strand, within Echvi_2230at 2655.026 kb on - strand, within Echvi_2230at 2655.053 kb on - strand, within Echvi_2230at 2655.053 kb on - strand, within Echvi_2230at 2655.187 kb on - strand, within Echvi_2230

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
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2,652,506 + +0.2
2,652,528 + +1.4
2,652,529 - -0.6
2,652,541 - -0.3
2,652,545 - -0.6
2,652,586 - +0.1
2,652,633 + -0.2
2,652,634 - +0.6
2,652,650 + +0.6
2,652,650 + -0.2
2,652,685 - -1.9
2,652,750 - -0.5
2,652,750 - +0.1
2,652,757 - +0.3
2,652,803 + Echvi_2228 0.16 -0.7
2,652,804 - Echvi_2228 0.16 +0.2
2,652,864 - Echvi_2228 0.25 -0.7
2,652,894 + Echvi_2228 0.29 +1.0
2,652,895 - Echvi_2228 0.29 -1.1
2,652,895 - Echvi_2228 0.29 -0.1
2,652,940 + Echvi_2228 0.36 +0.7
2,652,941 - Echvi_2228 0.36 -0.7
2,652,953 - Echvi_2228 0.38 -0.9
2,652,954 + Echvi_2228 0.38 +1.1
2,652,954 + Echvi_2228 0.38 -0.7
2,652,954 + Echvi_2228 0.38 -0.2
2,652,955 - Echvi_2228 0.38 -0.4
2,652,955 - Echvi_2228 0.38 -0.9
2,653,094 - Echvi_2228 0.59 +0.4
2,653,124 + Echvi_2228 0.64 -0.2
2,653,124 + Echvi_2228 0.64 +1.2
2,653,125 - Echvi_2228 0.64 -0.5
2,653,125 - Echvi_2228 0.64 -0.7
2,653,125 - Echvi_2228 0.64 +1.2
2,653,130 + Echvi_2228 0.65 +0.2
2,653,131 - Echvi_2228 0.65 -0.3
2,653,131 - Echvi_2228 0.65 +0.3
2,653,155 + Echvi_2228 0.69 +0.8
2,653,156 - Echvi_2228 0.69 +0.4
2,653,197 + Echvi_2228 0.75 +0.6
2,653,300 + -0.9
2,653,301 - +0.1
2,653,321 - +0.2
2,653,331 - +0.4
2,653,345 - +1.6
2,653,396 - -0.6
2,653,396 - +0.1
2,653,485 + -0.9
2,653,486 - +1.0
2,653,602 + Echvi_2229 0.17 -0.2
2,653,602 + Echvi_2229 0.17 -0.9
2,653,602 + Echvi_2229 0.17 -0.1
2,653,603 - Echvi_2229 0.17 +0.8
2,653,659 - Echvi_2229 0.24 +0.6
2,653,659 - Echvi_2229 0.24 -0.4
2,653,693 + Echvi_2229 0.29 +0.1
2,653,761 + Echvi_2229 0.38 -0.2
2,653,762 - Echvi_2229 0.38 -0.8
2,653,762 - Echvi_2229 0.38 -1.4
2,653,795 + Echvi_2229 0.42 -0.2
2,653,840 - Echvi_2229 0.48 +0.1
2,653,842 - Echvi_2229 0.49 -2.5
2,653,881 - Echvi_2229 0.54 +0.6
2,653,881 - Echvi_2229 0.54 +1.4
2,653,974 + Echvi_2229 0.66 +0.6
2,653,975 - Echvi_2229 0.66 +0.6
2,654,015 + Echvi_2229 0.72 +1.0
2,654,051 + Echvi_2229 0.77 +1.1
2,654,052 - Echvi_2229 0.77 +0.8
2,654,072 + Echvi_2229 0.79 -1.2
2,654,073 - Echvi_2229 0.79 +1.8
2,654,232 + +0.2
2,654,233 - +0.4
2,654,233 - +0.2
2,654,233 - -0.8
2,654,233 - -2.2
2,654,236 + +0.6
2,654,236 + +0.6
2,654,286 + +1.0
2,654,331 + +2.4
2,654,331 + +1.1
2,654,332 - -0.1
2,654,352 + +1.4
2,654,353 - +0.7
2,654,378 + +0.5
2,654,384 + +0.9
2,654,384 + +1.2
2,654,536 + Echvi_2230 0.14 -0.9
2,654,536 + Echvi_2230 0.14 +0.1
2,654,537 - Echvi_2230 0.14 +0.1
2,654,538 + Echvi_2230 0.14 +0.6
2,654,614 + Echvi_2230 0.21 +2.1
2,654,614 + Echvi_2230 0.21 -0.4
2,654,625 - Echvi_2230 0.22 +0.6
2,654,657 - Echvi_2230 0.25 +0.0
2,654,717 - Echvi_2230 0.31 -0.2
2,654,717 - Echvi_2230 0.31 -0.4
2,654,839 + Echvi_2230 0.42 -1.2
2,655,026 - Echvi_2230 0.60 +0.1
2,655,053 - Echvi_2230 0.63 -0.5
2,655,053 - Echvi_2230 0.63 -0.2
2,655,187 - Echvi_2230 0.75 -0.7

Or see this region's nucleotide sequence