Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0847

Experiment: m.b. Carbenicillin 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0846 and Echvi_0847 are separated by 158 nucleotidesEchvi_0847 and Echvi_0848 are separated by 251 nucleotides Echvi_0846: Echvi_0846 - hypothetical protein, at 967,135 to 970,137 _0846 Echvi_0847: Echvi_0847 - Predicted dinucleotide-binding enzymes, at 970,296 to 970,910 _0847 Echvi_0848: Echvi_0848 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 971,162 to 971,950 _0848 Position (kb) 970 971Strain fitness (log2 ratio) -2 -1 0 1 2 3at 969.327 kb on + strand, within Echvi_0846at 969.327 kb on + strand, within Echvi_0846at 969.403 kb on - strand, within Echvi_0846at 969.438 kb on + strand, within Echvi_0846at 969.484 kb on - strand, within Echvi_0846at 969.484 kb on - strand, within Echvi_0846at 969.503 kb on + strand, within Echvi_0846at 969.503 kb on + strand, within Echvi_0846at 969.504 kb on - strand, within Echvi_0846at 969.504 kb on - strand, within Echvi_0846at 969.508 kb on + strand, within Echvi_0846at 969.509 kb on - strand, within Echvi_0846at 969.563 kb on + strand, within Echvi_0846at 969.563 kb on + strand, within Echvi_0846at 969.665 kb on - strand, within Echvi_0846at 969.665 kb on - strand, within Echvi_0846at 969.665 kb on - strand, within Echvi_0846at 969.746 kb on + strand, within Echvi_0846at 969.775 kb on + strand, within Echvi_0846at 969.780 kb on - strand, within Echvi_0846at 969.832 kb on + strand, within Echvi_0846at 969.833 kb on - strand, within Echvi_0846at 969.886 kb on - strandat 969.886 kb on - strandat 969.940 kb on + strandat 969.943 kb on - strandat 969.989 kb on + strandat 969.989 kb on + strandat 969.989 kb on + strandat 969.989 kb on + strandat 969.989 kb on + strandat 969.990 kb on - strandat 969.990 kb on - strandat 969.993 kb on - strandat 969.993 kb on - strandat 969.993 kb on - strandat 969.993 kb on - strandat 969.993 kb on - strandat 970.109 kb on - strandat 970.110 kb on + strandat 970.110 kb on + strandat 970.110 kb on + strandat 970.110 kb on + strandat 970.111 kb on - strandat 970.111 kb on - strandat 970.114 kb on - strandat 970.153 kb on - strandat 970.180 kb on - strandat 970.198 kb on + strandat 970.199 kb on - strandat 970.200 kb on + strandat 970.200 kb on + strandat 970.200 kb on + strandat 970.201 kb on - strandat 970.321 kb on + strandat 970.321 kb on + strandat 970.369 kb on + strand, within Echvi_0847at 970.369 kb on + strand, within Echvi_0847at 970.380 kb on + strand, within Echvi_0847at 970.545 kb on - strand, within Echvi_0847at 970.555 kb on - strand, within Echvi_0847at 970.558 kb on - strand, within Echvi_0847at 970.565 kb on + strand, within Echvi_0847at 970.565 kb on + strand, within Echvi_0847at 970.566 kb on - strand, within Echvi_0847at 970.588 kb on + strand, within Echvi_0847at 970.588 kb on + strand, within Echvi_0847at 970.599 kb on - strand, within Echvi_0847at 970.616 kb on + strand, within Echvi_0847at 970.618 kb on + strand, within Echvi_0847at 970.618 kb on + strand, within Echvi_0847at 970.619 kb on - strand, within Echvi_0847at 970.641 kb on + strand, within Echvi_0847at 970.641 kb on + strand, within Echvi_0847at 970.645 kb on - strand, within Echvi_0847at 970.649 kb on + strand, within Echvi_0847at 970.649 kb on + strand, within Echvi_0847at 970.649 kb on + strand, within Echvi_0847at 970.649 kb on + strand, within Echvi_0847at 970.679 kb on + strand, within Echvi_0847at 970.679 kb on + strand, within Echvi_0847at 970.683 kb on + strand, within Echvi_0847at 970.684 kb on - strand, within Echvi_0847at 970.684 kb on - strand, within Echvi_0847at 970.684 kb on - strand, within Echvi_0847at 970.718 kb on + strand, within Echvi_0847at 970.759 kb on - strand, within Echvi_0847at 970.759 kb on - strand, within Echvi_0847at 970.763 kb on + strand, within Echvi_0847at 970.764 kb on - strand, within Echvi_0847at 970.795 kb on - strand, within Echvi_0847at 970.795 kb on - strand, within Echvi_0847at 970.795 kb on - strand, within Echvi_0847at 970.821 kb on + strand, within Echvi_0847at 970.839 kb on + strand, within Echvi_0847at 970.854 kb on - strandat 970.854 kb on - strandat 970.855 kb on + strandat 970.855 kb on + strandat 970.855 kb on + strandat 970.856 kb on - strandat 970.856 kb on - strandat 970.902 kb on + strandat 970.915 kb on - strandat 970.925 kb on + strandat 970.926 kb on - strandat 970.930 kb on + strandat 971.057 kb on + strandat 971.057 kb on + strandat 971.057 kb on + strandat 971.078 kb on + strandat 971.148 kb on - strandat 971.149 kb on + strandat 971.150 kb on - strandat 971.241 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.367 kb on + strand, within Echvi_0848at 971.368 kb on - strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.445 kb on + strand, within Echvi_0848at 971.446 kb on - strand, within Echvi_0848at 971.472 kb on + strand, within Echvi_0848at 971.493 kb on - strand, within Echvi_0848at 971.493 kb on - strand, within Echvi_0848at 971.523 kb on - strand, within Echvi_0848at 971.543 kb on - strand, within Echvi_0848at 971.543 kb on - strand, within Echvi_0848at 971.584 kb on + strand, within Echvi_0848at 971.584 kb on + strand, within Echvi_0848at 971.587 kb on + strand, within Echvi_0848at 971.588 kb on - strand, within Echvi_0848at 971.598 kb on + strand, within Echvi_0848at 971.599 kb on - strand, within Echvi_0848at 971.599 kb on - strand, within Echvi_0848at 971.699 kb on + strand, within Echvi_0848at 971.700 kb on - strand, within Echvi_0848at 971.700 kb on - strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.712 kb on + strand, within Echvi_0848at 971.712 kb on + strand, within Echvi_0848at 971.752 kb on + strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.852 kb on + strand, within Echvi_0848at 971.857 kb on + strand, within Echvi_0848

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
remove
969,327 + Echvi_0846 0.73 -0.1
969,327 + Echvi_0846 0.73 -0.1
969,403 - Echvi_0846 0.76 +0.5
969,438 + Echvi_0846 0.77 -0.1
969,484 - Echvi_0846 0.78 +1.5
969,484 - Echvi_0846 0.78 +0.6
969,503 + Echvi_0846 0.79 +0.6
969,503 + Echvi_0846 0.79 -0.3
969,504 - Echvi_0846 0.79 -0.0
969,504 - Echvi_0846 0.79 +0.1
969,508 + Echvi_0846 0.79 +1.4
969,509 - Echvi_0846 0.79 -0.2
969,563 + Echvi_0846 0.81 -0.4
969,563 + Echvi_0846 0.81 -0.1
969,665 - Echvi_0846 0.84 +0.6
969,665 - Echvi_0846 0.84 -0.7
969,665 - Echvi_0846 0.84 +0.4
969,746 + Echvi_0846 0.87 -0.4
969,775 + Echvi_0846 0.88 -0.3
969,780 - Echvi_0846 0.88 -0.4
969,832 + Echvi_0846 0.90 +1.1
969,833 - Echvi_0846 0.90 -0.4
969,886 - +0.5
969,886 - -0.7
969,940 + +0.6
969,943 - -0.3
969,989 + -2.2
969,989 + -0.4
969,989 + +1.8
969,989 + +0.5
969,989 + -0.9
969,990 - -0.4
969,990 - -0.2
969,993 - +1.1
969,993 - -1.5
969,993 - -0.4
969,993 - -0.1
969,993 - +0.2
970,109 - +1.8
970,110 + -0.3
970,110 + +0.7
970,110 + -1.0
970,110 + +0.8
970,111 - +0.2
970,111 - -0.2
970,114 - +2.2
970,153 - -0.1
970,180 - +0.3
970,198 + -1.2
970,199 - +0.0
970,200 + +0.2
970,200 + +0.6
970,200 + +0.2
970,201 - +0.0
970,321 + +1.0
970,321 + -0.8
970,369 + Echvi_0847 0.12 +0.0
970,369 + Echvi_0847 0.12 +0.3
970,380 + Echvi_0847 0.14 -0.9
970,545 - Echvi_0847 0.40 -1.8
970,555 - Echvi_0847 0.42 +2.4
970,558 - Echvi_0847 0.43 +1.1
970,565 + Echvi_0847 0.44 +3.4
970,565 + Echvi_0847 0.44 +1.1
970,566 - Echvi_0847 0.44 +0.5
970,588 + Echvi_0847 0.47 -1.8
970,588 + Echvi_0847 0.47 -0.7
970,599 - Echvi_0847 0.49 +0.9
970,616 + Echvi_0847 0.52 +0.1
970,618 + Echvi_0847 0.52 +0.0
970,618 + Echvi_0847 0.52 +0.5
970,619 - Echvi_0847 0.53 +1.5
970,641 + Echvi_0847 0.56 +0.0
970,641 + Echvi_0847 0.56 +1.2
970,645 - Echvi_0847 0.57 -1.5
970,649 + Echvi_0847 0.57 +1.2
970,649 + Echvi_0847 0.57 +1.3
970,649 + Echvi_0847 0.57 -1.4
970,649 + Echvi_0847 0.57 +0.7
970,679 + Echvi_0847 0.62 -0.0
970,679 + Echvi_0847 0.62 -2.0
970,683 + Echvi_0847 0.63 -0.1
970,684 - Echvi_0847 0.63 +0.5
970,684 - Echvi_0847 0.63 -0.0
970,684 - Echvi_0847 0.63 +0.4
970,718 + Echvi_0847 0.69 +0.4
970,759 - Echvi_0847 0.75 +1.2
970,759 - Echvi_0847 0.75 +0.2
970,763 + Echvi_0847 0.76 -0.5
970,764 - Echvi_0847 0.76 +1.1
970,795 - Echvi_0847 0.81 +1.4
970,795 - Echvi_0847 0.81 +0.1
970,795 - Echvi_0847 0.81 +1.5
970,821 + Echvi_0847 0.85 -0.3
970,839 + Echvi_0847 0.88 +0.2
970,854 - +0.6
970,854 - +1.0
970,855 + -1.4
970,855 + +0.4
970,855 + +0.7
970,856 - +0.6
970,856 - +0.1
970,902 + -0.3
970,915 - +1.2
970,925 + -0.7
970,926 - +1.2
970,930 + -0.4
971,057 + -0.8
971,057 + +0.2
971,057 + -1.1
971,078 + -1.3
971,148 - -0.0
971,149 + -0.6
971,150 - -0.4
971,241 + Echvi_0848 0.10 -0.5
971,316 + Echvi_0848 0.20 -0.9
971,316 + Echvi_0848 0.20 +0.5
971,316 + Echvi_0848 0.20 +2.2
971,367 + Echvi_0848 0.26 -1.2
971,368 - Echvi_0848 0.26 +1.3
971,441 + Echvi_0848 0.35 +0.3
971,441 + Echvi_0848 0.35 +0.3
971,441 + Echvi_0848 0.35 +0.5
971,445 + Echvi_0848 0.36 +0.7
971,446 - Echvi_0848 0.36 -0.2
971,472 + Echvi_0848 0.39 -1.0
971,493 - Echvi_0848 0.42 +0.4
971,493 - Echvi_0848 0.42 +1.0
971,523 - Echvi_0848 0.46 +0.8
971,543 - Echvi_0848 0.48 -0.5
971,543 - Echvi_0848 0.48 +0.9
971,584 + Echvi_0848 0.53 +0.7
971,584 + Echvi_0848 0.53 +0.3
971,587 + Echvi_0848 0.54 -0.2
971,588 - Echvi_0848 0.54 +0.6
971,598 + Echvi_0848 0.55 -1.6
971,599 - Echvi_0848 0.55 +0.4
971,599 - Echvi_0848 0.55 -0.8
971,699 + Echvi_0848 0.68 -0.5
971,700 - Echvi_0848 0.68 +0.1
971,700 - Echvi_0848 0.68 -0.3
971,710 + Echvi_0848 0.69 -0.4
971,710 + Echvi_0848 0.69 -0.2
971,710 + Echvi_0848 0.69 +1.4
971,712 + Echvi_0848 0.70 -0.2
971,712 + Echvi_0848 0.70 +0.3
971,752 + Echvi_0848 0.75 -1.0
971,821 - Echvi_0848 0.84 +0.1
971,821 - Echvi_0848 0.84 +0.1
971,821 - Echvi_0848 0.84 -0.3
971,821 - Echvi_0848 0.84 +1.6
971,852 + Echvi_0848 0.87 -0.5
971,857 + Echvi_0848 0.88 +0.6

Or see this region's nucleotide sequence