Experiment: m.b. Carbenicillin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0100 and Echvi_0101 are separated by 11 nucleotides Echvi_0101 and Echvi_0102 are separated by 35 nucleotides Echvi_0102 and Echvi_0103 are separated by 6 nucleotides Echvi_0103 and Echvi_0104 are separated by 104 nucleotides Echvi_0104 and Echvi_0105 are separated by 18 nucleotides
Echvi_0100: Echvi_0100 - NAD dependent epimerase/dehydratase family., at 99,196 to 99,915
_0100
Echvi_0101: Echvi_0101 - hypothetical protein, at 99,927 to 100,538
_0101
Echvi_0102: Echvi_0102 - Uncharacterized conserved protein, at 100,574 to 101,005
_0102
Echvi_0103: Echvi_0103 - hypothetical protein, at 101,012 to 101,533
_0103
Echvi_0104: Echvi_0104 - Iron-sulfur cluster assembly accessory protein, at 101,638 to 101,958
_0104
Echvi_0105: Echvi_0105 - hypothetical protein, at 101,977 to 102,477
_0105
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.575 kb on + strand, within Echvi_0100 at 99.575 kb on + strand, within Echvi_0100 at 99.576 kb on - strand, within Echvi_0100 at 99.586 kb on + strand, within Echvi_0100 at 99.586 kb on + strand, within Echvi_0100 at 99.586 kb on + strand, within Echvi_0100 at 99.587 kb on - strand, within Echvi_0100 at 99.635 kb on - strand, within Echvi_0100 at 99.652 kb on + strand, within Echvi_0100 at 99.674 kb on + strand, within Echvi_0100 at 99.706 kb on + strand, within Echvi_0100 at 99.707 kb on - strand, within Echvi_0100 at 99.707 kb on - strand, within Echvi_0100 at 99.707 kb on - strand, within Echvi_0100 at 99.708 kb on + strand, within Echvi_0100 at 99.793 kb on - strand, within Echvi_0100 at 99.833 kb on + strand, within Echvi_0100 at 99.834 kb on - strand, within Echvi_0100 at 99.834 kb on - strand, within Echvi_0100 at 99.874 kb on + strand at 99.875 kb on - strand at 99.916 kb on - strand at 99.947 kb on + strand at 99.948 kb on - strand at 99.948 kb on - strand at 99.974 kb on + strand at 99.975 kb on - strand at 99.986 kb on - strand at 100.128 kb on + strand, within Echvi_0101 at 100.129 kb on - strand, within Echvi_0101 at 100.194 kb on + strand, within Echvi_0101 at 100.200 kb on - strand, within Echvi_0101 at 100.212 kb on + strand, within Echvi_0101 at 100.245 kb on - strand, within Echvi_0101 at 100.247 kb on - strand, within Echvi_0101 at 100.247 kb on - strand, within Echvi_0101 at 100.254 kb on - strand, within Echvi_0101 at 100.399 kb on + strand, within Echvi_0101 at 100.399 kb on + strand, within Echvi_0101 at 100.400 kb on - strand, within Echvi_0101 at 100.400 kb on - strand, within Echvi_0101 at 100.474 kb on + strand, within Echvi_0101 at 100.540 kb on + strand at 100.540 kb on + strand at 100.582 kb on + strand at 100.730 kb on + strand, within Echvi_0102 at 100.739 kb on + strand, within Echvi_0102 at 100.753 kb on + strand, within Echvi_0102 at 100.883 kb on + strand, within Echvi_0102 at 100.892 kb on + strand, within Echvi_0102 at 100.935 kb on + strand, within Echvi_0102 at 100.951 kb on + strand, within Echvi_0102 at 100.955 kb on + strand, within Echvi_0102 at 101.021 kb on + strand at 101.021 kb on + strand at 101.060 kb on + strand at 101.122 kb on + strand, within Echvi_0103 at 101.218 kb on - strand, within Echvi_0103 at 101.237 kb on - strand, within Echvi_0103 at 101.237 kb on - strand, within Echvi_0103 at 101.295 kb on + strand, within Echvi_0103 at 101.295 kb on + strand, within Echvi_0103 at 101.306 kb on - strand, within Echvi_0103 at 101.306 kb on - strand, within Echvi_0103 at 101.309 kb on + strand, within Echvi_0103 at 101.321 kb on + strand, within Echvi_0103 at 101.321 kb on + strand, within Echvi_0103 at 101.326 kb on + strand, within Echvi_0103 at 101.336 kb on - strand, within Echvi_0103 at 101.469 kb on + strand, within Echvi_0103 at 101.469 kb on + strand, within Echvi_0103 at 101.469 kb on + strand, within Echvi_0103 at 101.470 kb on - strand, within Echvi_0103 at 101.470 kb on - strand, within Echvi_0103 at 101.470 kb on - strand, within Echvi_0103 at 101.478 kb on + strand, within Echvi_0103 at 101.536 kb on - strand at 101.538 kb on + strand at 101.559 kb on + strand at 101.587 kb on + strand at 101.588 kb on - strand at 101.629 kb on + strand at 101.652 kb on + strand at 101.652 kb on + strand at 101.653 kb on - strand at 101.700 kb on + strand, within Echvi_0104 at 101.701 kb on - strand, within Echvi_0104 at 101.739 kb on - strand, within Echvi_0104 at 101.973 kb on + strand at 101.973 kb on + strand at 101.973 kb on + strand at 101.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml remove 99,575 + Echvi_0100 0.53 +0.6 99,575 + Echvi_0100 0.53 +0.1 99,576 - Echvi_0100 0.53 -0.7 99,586 + Echvi_0100 0.54 -0.6 99,586 + Echvi_0100 0.54 -0.5 99,586 + Echvi_0100 0.54 -0.0 99,587 - Echvi_0100 0.54 -1.0 99,635 - Echvi_0100 0.61 -0.8 99,652 + Echvi_0100 0.63 -0.2 99,674 + Echvi_0100 0.66 +0.1 99,706 + Echvi_0100 0.71 -0.2 99,707 - Echvi_0100 0.71 +0.4 99,707 - Echvi_0100 0.71 +0.8 99,707 - Echvi_0100 0.71 +0.3 99,708 + Echvi_0100 0.71 +0.3 99,793 - Echvi_0100 0.83 -0.6 99,833 + Echvi_0100 0.88 -1.2 99,834 - Echvi_0100 0.89 +1.3 99,834 - Echvi_0100 0.89 -0.4 99,874 + +0.4 99,875 - -0.5 99,916 - +0.2 99,947 + -1.0 99,948 - -0.5 99,948 - -0.2 99,974 + +0.2 99,975 - +2.6 99,986 - +0.0 100,128 + Echvi_0101 0.33 +0.2 100,129 - Echvi_0101 0.33 -0.1 100,194 + Echvi_0101 0.44 +0.1 100,200 - Echvi_0101 0.45 +0.0 100,212 + Echvi_0101 0.47 -0.4 100,245 - Echvi_0101 0.52 -0.1 100,247 - Echvi_0101 0.52 +1.9 100,247 - Echvi_0101 0.52 +0.6 100,254 - Echvi_0101 0.53 -0.2 100,399 + Echvi_0101 0.77 -2.0 100,399 + Echvi_0101 0.77 +0.4 100,400 - Echvi_0101 0.77 -0.3 100,400 - Echvi_0101 0.77 +1.0 100,474 + Echvi_0101 0.89 -0.4 100,540 + +1.0 100,540 + -0.3 100,582 + +0.7 100,730 + Echvi_0102 0.36 -0.3 100,739 + Echvi_0102 0.38 -0.6 100,753 + Echvi_0102 0.41 -0.7 100,883 + Echvi_0102 0.72 -1.5 100,892 + Echvi_0102 0.74 -1.5 100,935 + Echvi_0102 0.84 +0.0 100,951 + Echvi_0102 0.87 +1.2 100,955 + Echvi_0102 0.88 -0.1 101,021 + -0.4 101,021 + -0.4 101,060 + -0.6 101,122 + Echvi_0103 0.21 -0.0 101,218 - Echvi_0103 0.39 -0.4 101,237 - Echvi_0103 0.43 +1.1 101,237 - Echvi_0103 0.43 -0.8 101,295 + Echvi_0103 0.54 -0.0 101,295 + Echvi_0103 0.54 -0.6 101,306 - Echvi_0103 0.56 -0.7 101,306 - Echvi_0103 0.56 -0.1 101,309 + Echvi_0103 0.57 +2.2 101,321 + Echvi_0103 0.59 +0.3 101,321 + Echvi_0103 0.59 -0.3 101,326 + Echvi_0103 0.60 +0.0 101,336 - Echvi_0103 0.62 +1.6 101,469 + Echvi_0103 0.88 +0.1 101,469 + Echvi_0103 0.88 -1.4 101,469 + Echvi_0103 0.88 -0.3 101,470 - Echvi_0103 0.88 -0.4 101,470 - Echvi_0103 0.88 +0.6 101,470 - Echvi_0103 0.88 -0.0 101,478 + Echvi_0103 0.89 -0.1 101,536 - +0.2 101,538 + -0.1 101,559 + -2.7 101,587 + -0.2 101,588 - +1.4 101,629 + -0.2 101,652 + +0.6 101,652 + +0.5 101,653 - -0.0 101,700 + Echvi_0104 0.19 -0.2 101,701 - Echvi_0104 0.20 -1.0 101,739 - Echvi_0104 0.31 +1.2 101,973 + +1.3 101,973 + +0.6 101,973 + -0.4 101,974 - +0.2
Or see this region's nucleotide sequence