Strain Fitness in Escherichia coli BW25113 around b2240
Experiment: Thallium(I) acetate 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,348,055 | + | +0.1 | |||
2,348,084 | - | glpQ | b2239 | 0.12 | -0.1 |
2,348,084 | - | glpQ | b2239 | 0.12 | -0.6 |
2,348,093 | + | glpQ | b2239 | 0.13 | -1.4 |
2,348,099 | - | glpQ | b2239 | 0.13 | -1.6 |
2,348,101 | - | glpQ | b2239 | 0.13 | +1.0 |
2,348,101 | - | glpQ | b2239 | 0.13 | -1.0 |
2,348,101 | - | glpQ | b2239 | 0.13 | -0.4 |
2,348,101 | - | glpQ | b2239 | 0.13 | +0.0 |
2,348,101 | - | glpQ | b2239 | 0.13 | -0.8 |
2,348,137 | - | glpQ | b2239 | 0.17 | -0.3 |
2,348,149 | - | glpQ | b2239 | 0.18 | +0.3 |
2,348,149 | - | glpQ | b2239 | 0.18 | +0.8 |
2,348,153 | + | glpQ | b2239 | 0.18 | -0.0 |
2,348,211 | + | glpQ | b2239 | 0.24 | +0.4 |
2,348,219 | - | glpQ | b2239 | 0.24 | +0.9 |
2,348,338 | - | glpQ | b2239 | 0.35 | -0.7 |
2,348,511 | - | glpQ | b2239 | 0.51 | +0.5 |
2,348,636 | + | glpQ | b2239 | 0.63 | -1.0 |
2,348,636 | + | glpQ | b2239 | 0.63 | +0.6 |
2,348,839 | + | glpQ | b2239 | 0.82 | +0.2 |
2,348,899 | - | glpQ | b2239 | 0.87 | +0.3 |
2,348,899 | - | glpQ | b2239 | 0.87 | +1.2 |
2,348,987 | - | -0.1 | |||
2,348,987 | - | +0.4 | |||
2,348,990 | - | -0.2 | |||
2,349,035 | + | +0.3 | |||
2,349,042 | + | -0.1 | |||
2,349,175 | + | glpT | b2240 | 0.10 | -0.4 |
2,349,185 | - | glpT | b2240 | 0.11 | -0.1 |
2,349,185 | - | glpT | b2240 | 0.11 | +0.2 |
2,349,185 | - | glpT | b2240 | 0.11 | -0.0 |
2,349,229 | + | glpT | b2240 | 0.14 | -0.4 |
2,349,237 | - | glpT | b2240 | 0.15 | -0.3 |
2,349,237 | - | glpT | b2240 | 0.15 | -0.0 |
2,349,298 | + | glpT | b2240 | 0.19 | -0.0 |
2,349,478 | - | glpT | b2240 | 0.32 | +0.6 |
2,349,573 | - | glpT | b2240 | 0.39 | -0.9 |
2,349,573 | - | glpT | b2240 | 0.39 | -0.3 |
2,349,583 | - | glpT | b2240 | 0.40 | -0.1 |
2,349,616 | - | glpT | b2240 | 0.43 | -0.2 |
2,349,618 | - | glpT | b2240 | 0.43 | +0.0 |
2,349,661 | - | glpT | b2240 | 0.46 | -0.6 |
2,349,755 | + | glpT | b2240 | 0.53 | -0.4 |
2,349,755 | + | glpT | b2240 | 0.53 | -0.4 |
2,349,756 | - | glpT | b2240 | 0.53 | +0.2 |
2,349,763 | - | glpT | b2240 | 0.53 | -0.4 |
2,349,763 | - | glpT | b2240 | 0.53 | +0.2 |
2,349,765 | + | glpT | b2240 | 0.53 | -0.6 |
2,349,773 | - | glpT | b2240 | 0.54 | -0.7 |
2,349,819 | + | glpT | b2240 | 0.57 | +1.9 |
2,349,819 | + | glpT | b2240 | 0.57 | +0.2 |
2,349,827 | - | glpT | b2240 | 0.58 | +1.0 |
2,349,911 | + | glpT | b2240 | 0.64 | -0.0 |
2,349,911 | + | glpT | b2240 | 0.64 | -0.2 |
2,349,956 | + | glpT | b2240 | 0.68 | +0.6 |
2,349,993 | + | glpT | b2240 | 0.70 | +0.0 |
2,350,038 | + | glpT | b2240 | 0.74 | +0.1 |
2,350,348 | - | +1.2 | |||
2,350,348 | - | +0.4 | |||
2,350,401 | - | -0.6 | |||
2,350,401 | - | +0.2 | |||
2,350,783 | + | -0.4 | |||
2,350,805 | + | +1.2 | |||
2,350,805 | + | -0.4 | |||
2,350,830 | + | +0.6 | |||
2,350,912 | + | glpA | b2241 | 0.15 | -0.4 |
2,350,912 | + | glpA | b2241 | 0.15 | -0.4 |
2,350,942 | - | glpA | b2241 | 0.17 | -0.4 |
2,351,130 | - | glpA | b2241 | 0.28 | -2.1 |
2,351,132 | + | glpA | b2241 | 0.28 | -0.6 |
2,351,155 | + | glpA | b2241 | 0.30 | -0.4 |
2,351,180 | - | glpA | b2241 | 0.31 | +0.3 |
2,351,217 | + | glpA | b2241 | 0.34 | -0.4 |
2,351,220 | + | glpA | b2241 | 0.34 | +1.6 |
2,351,235 | - | glpA | b2241 | 0.35 | -0.3 |
2,351,278 | + | glpA | b2241 | 0.37 | +0.0 |
2,351,286 | - | glpA | b2241 | 0.38 | -0.2 |
2,351,286 | - | glpA | b2241 | 0.38 | -0.4 |
2,351,298 | + | glpA | b2241 | 0.39 | -0.4 |
2,351,353 | + | glpA | b2241 | 0.42 | +1.2 |
2,351,353 | + | glpA | b2241 | 0.42 | -0.6 |
2,351,392 | - | glpA | b2241 | 0.44 | +0.7 |
Or see this region's nucleotide sequence