Strain Fitness in Escherichia coli BW25113 around b1225

Experiment: Thallium(I) acetate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarG and narH overlap by 4 nucleotidesnarH and narJ overlap by 4 nucleotidesnarJ and narI overlap by 1 nucleotides b1224: narG - nitrate reductase 1, alpha subunit (NCBI), at 1,279,087 to 1,282,830 narG b1225: narH - nitrate reductase 1, beta (Fe-S) subunit (NCBI), at 1,282,827 to 1,284,365 narH b1226: narJ - molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 (NCBI), at 1,284,362 to 1,285,072 narJ b1227: narI - nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI), at 1,285,072 to 1,285,749 narI Position (kb) 1282 1283 1284 1285Strain fitness (log2 ratio) -2 -1 0 1 2at 1281.833 kb on + strand, within narGat 1281.833 kb on + strand, within narGat 1281.870 kb on + strand, within narGat 1281.881 kb on + strand, within narGat 1281.881 kb on + strand, within narGat 1282.127 kb on - strand, within narGat 1282.221 kb on + strand, within narGat 1282.221 kb on + strand, within narGat 1282.634 kb on - strandat 1282.810 kb on + strandat 1282.810 kb on + strandat 1282.856 kb on + strandat 1282.954 kb on - strandat 1282.954 kb on - strandat 1283.081 kb on + strand, within narHat 1283.279 kb on + strand, within narHat 1283.638 kb on + strand, within narHat 1283.650 kb on - strand, within narHat 1283.650 kb on - strand, within narHat 1283.882 kb on + strand, within narHat 1283.882 kb on + strand, within narHat 1283.939 kb on + strand, within narHat 1283.947 kb on - strand, within narHat 1283.947 kb on - strand, within narHat 1284.099 kb on + strand, within narHat 1284.152 kb on + strand, within narHat 1284.436 kb on + strand, within narJat 1284.436 kb on + strand, within narJat 1284.480 kb on + strand, within narJat 1284.554 kb on - strand, within narJat 1284.634 kb on + strand, within narJat 1284.728 kb on - strand, within narJat 1284.809 kb on + strand, within narJat 1284.809 kb on + strand, within narJat 1285.100 kb on + strandat 1285.167 kb on + strand, within narIat 1285.352 kb on - strand, within narIat 1285.352 kb on - strand, within narI

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0625 mg/ml
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1,281,833 + narG b1224 0.73 +2.3
1,281,833 + narG b1224 0.73 -2.1
1,281,870 + narG b1224 0.74 +1.2
1,281,881 + narG b1224 0.75 -0.1
1,281,881 + narG b1224 0.75 +1.3
1,282,127 - narG b1224 0.81 +0.8
1,282,221 + narG b1224 0.84 +0.2
1,282,221 + narG b1224 0.84 -0.4
1,282,634 - -0.1
1,282,810 + -0.3
1,282,810 + -2.3
1,282,856 + +0.7
1,282,954 - +1.0
1,282,954 - -0.5
1,283,081 + narH b1225 0.17 -0.3
1,283,279 + narH b1225 0.29 -0.4
1,283,638 + narH b1225 0.53 +0.7
1,283,650 - narH b1225 0.53 +0.1
1,283,650 - narH b1225 0.53 +0.1
1,283,882 + narH b1225 0.69 +0.5
1,283,882 + narH b1225 0.69 +0.3
1,283,939 + narH b1225 0.72 -0.1
1,283,947 - narH b1225 0.73 +2.1
1,283,947 - narH b1225 0.73 +0.3
1,284,099 + narH b1225 0.83 -0.4
1,284,152 + narH b1225 0.86 -0.1
1,284,436 + narJ b1226 0.10 -0.5
1,284,436 + narJ b1226 0.10 +0.3
1,284,480 + narJ b1226 0.17 +0.5
1,284,554 - narJ b1226 0.27 -1.1
1,284,634 + narJ b1226 0.38 -0.2
1,284,728 - narJ b1226 0.51 +0.6
1,284,809 + narJ b1226 0.63 -1.1
1,284,809 + narJ b1226 0.63 -0.5
1,285,100 + +0.1
1,285,167 + narI b1227 0.14 +0.7
1,285,352 - narI b1227 0.41 -0.3
1,285,352 - narI b1227 0.41 +0.6

Or see this region's nucleotide sequence