Experiment: m.b. Spectinomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4643 and Echvi_4644 are separated by 67 nucleotides Echvi_4644 and Echvi_4645 are separated by 127 nucleotides Echvi_4645 and Echvi_4646 are separated by 413 nucleotides
Echvi_4643: Echvi_4643 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 5,556,402 to 5,557,286
_4643
Echvi_4644: Echvi_4644 - S23 ribosomal protein., at 5,557,354 to 5,557,706
_4644
Echvi_4645: Echvi_4645 - GTP-binding protein LepA, at 5,557,834 to 5,559,660
_4645
Echvi_4646: Echvi_4646 - SusD family., at 5,560,074 to 5,561,594
_4646
Position (kb) 5557
5558
5559
5560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5557.377 kb on + strand at 5557.381 kb on - strand at 5557.381 kb on - strand at 5557.390 kb on + strand, within Echvi_4644 at 5557.468 kb on + strand, within Echvi_4644 at 5557.469 kb on - strand, within Echvi_4644 at 5557.519 kb on + strand, within Echvi_4644 at 5557.588 kb on - strand, within Echvi_4644 at 5557.621 kb on - strand, within Echvi_4644 at 5557.622 kb on + strand, within Echvi_4644 at 5557.712 kb on - strand at 5557.728 kb on + strand at 5557.756 kb on - strand at 5557.775 kb on - strand at 5557.775 kb on - strand at 5557.809 kb on + strand at 5557.810 kb on - strand at 5557.829 kb on + strand at 5557.936 kb on - strand at 5558.428 kb on + strand, within Echvi_4645 at 5558.716 kb on - strand, within Echvi_4645 at 5558.931 kb on - strand, within Echvi_4645 at 5559.152 kb on - strand, within Echvi_4645 at 5559.433 kb on - strand, within Echvi_4645 at 5559.682 kb on + strand at 5559.682 kb on + strand at 5559.682 kb on + strand at 5559.682 kb on + strand at 5559.683 kb on - strand at 5559.683 kb on - strand at 5559.689 kb on - strand at 5559.689 kb on - strand at 5559.694 kb on - strand at 5559.699 kb on + strand at 5559.707 kb on - strand at 5559.825 kb on - strand at 5559.854 kb on - strand at 5559.854 kb on - strand at 5559.874 kb on + strand at 5559.875 kb on - strand at 5559.900 kb on + strand at 5559.900 kb on + strand at 5560.031 kb on + strand at 5560.031 kb on + strand at 5560.031 kb on + strand at 5560.031 kb on + strand at 5560.032 kb on - strand at 5560.032 kb on - strand at 5560.032 kb on - strand at 5560.116 kb on - strand at 5560.175 kb on + strand at 5560.175 kb on + strand at 5560.176 kb on - strand at 5560.193 kb on - strand at 5560.335 kb on + strand, within Echvi_4646 at 5560.336 kb on - strand, within Echvi_4646 at 5560.366 kb on + strand, within Echvi_4646 at 5560.366 kb on + strand, within Echvi_4646 at 5560.366 kb on + strand, within Echvi_4646 at 5560.367 kb on - strand, within Echvi_4646 at 5560.425 kb on + strand, within Echvi_4646 at 5560.426 kb on - strand, within Echvi_4646 at 5560.426 kb on - strand, within Echvi_4646 at 5560.440 kb on + strand, within Echvi_4646 at 5560.441 kb on - strand, within Echvi_4646 at 5560.501 kb on + strand, within Echvi_4646 at 5560.527 kb on - strand, within Echvi_4646 at 5560.541 kb on + strand, within Echvi_4646 at 5560.541 kb on + strand, within Echvi_4646 at 5560.541 kb on + strand, within Echvi_4646 at 5560.577 kb on + strand, within Echvi_4646 at 5560.577 kb on + strand, within Echvi_4646 at 5560.592 kb on - strand, within Echvi_4646 at 5560.598 kb on + strand, within Echvi_4646 at 5560.598 kb on + strand, within Echvi_4646 at 5560.598 kb on + strand, within Echvi_4646 at 5560.598 kb on + strand, within Echvi_4646 at 5560.598 kb on + strand, within Echvi_4646
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml remove 5,557,377 + -0.9 5,557,381 - -1.0 5,557,381 - +0.2 5,557,390 + Echvi_4644 0.10 -1.1 5,557,468 + Echvi_4644 0.32 +0.2 5,557,469 - Echvi_4644 0.33 +1.3 5,557,519 + Echvi_4644 0.47 +0.1 5,557,588 - Echvi_4644 0.66 -0.1 5,557,621 - Echvi_4644 0.76 +0.5 5,557,622 + Echvi_4644 0.76 -1.1 5,557,712 - -1.3 5,557,728 + +0.0 5,557,756 - +0.4 5,557,775 - +1.7 5,557,775 - +1.0 5,557,809 + -0.6 5,557,810 - +0.3 5,557,829 + -0.3 5,557,936 - -0.1 5,558,428 + Echvi_4645 0.33 -1.2 5,558,716 - Echvi_4645 0.48 -1.6 5,558,931 - Echvi_4645 0.60 -1.0 5,559,152 - Echvi_4645 0.72 -1.5 5,559,433 - Echvi_4645 0.88 -2.5 5,559,682 + -0.1 5,559,682 + -0.0 5,559,682 + -0.4 5,559,682 + -0.6 5,559,683 - +0.5 5,559,683 - -0.5 5,559,689 - -1.1 5,559,689 - +0.5 5,559,694 - +0.2 5,559,699 + -0.3 5,559,707 - +0.6 5,559,825 - +0.4 5,559,854 - +0.0 5,559,854 - -0.0 5,559,874 + +1.7 5,559,875 - +0.3 5,559,900 + -0.5 5,559,900 + +0.6 5,560,031 + +0.2 5,560,031 + +0.0 5,560,031 + -0.9 5,560,031 + -0.8 5,560,032 - +1.7 5,560,032 - -0.2 5,560,032 - +0.3 5,560,116 - -0.0 5,560,175 + -0.1 5,560,175 + -0.5 5,560,176 - -0.4 5,560,193 - -1.5 5,560,335 + Echvi_4646 0.17 -0.1 5,560,336 - Echvi_4646 0.17 +1.3 5,560,366 + Echvi_4646 0.19 +0.7 5,560,366 + Echvi_4646 0.19 -0.3 5,560,366 + Echvi_4646 0.19 -0.6 5,560,367 - Echvi_4646 0.19 -0.5 5,560,425 + Echvi_4646 0.23 -0.1 5,560,426 - Echvi_4646 0.23 -0.4 5,560,426 - Echvi_4646 0.23 +1.7 5,560,440 + Echvi_4646 0.24 -0.0 5,560,441 - Echvi_4646 0.24 -0.4 5,560,501 + Echvi_4646 0.28 +0.3 5,560,527 - Echvi_4646 0.30 +0.2 5,560,541 + Echvi_4646 0.31 +0.2 5,560,541 + Echvi_4646 0.31 +0.4 5,560,541 + Echvi_4646 0.31 +0.1 5,560,577 + Echvi_4646 0.33 -0.4 5,560,577 + Echvi_4646 0.33 -0.5 5,560,592 - Echvi_4646 0.34 -0.1 5,560,598 + Echvi_4646 0.34 +0.6 5,560,598 + Echvi_4646 0.34 +2.5 5,560,598 + Echvi_4646 0.34 +0.0 5,560,598 + Echvi_4646 0.34 +0.1 5,560,598 + Echvi_4646 0.34 -0.6
Or see this region's nucleotide sequence