Experiment: m.b. Spectinomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4363 and Echvi_4364 overlap by 8 nucleotides Echvi_4364 and Echvi_4365 are separated by 1 nucleotides Echvi_4365 and Echvi_4366 overlap by 23 nucleotides Echvi_4366 and Echvi_4367 are separated by 259 nucleotides
Echvi_4363: Echvi_4363 - Bacteroides conjugation system ATPase, TraG family, at 5,218,691 to 5,221,159
_4363
Echvi_4364: Echvi_4364 - hypothetical protein, at 5,221,152 to 5,221,478
_4364
Echvi_4365: Echvi_4365 - hypothetical protein, at 5,221,480 to 5,221,785
_4365
Echvi_4366: Echvi_4366 - hypothetical protein, at 5,221,763 to 5,222,110
_4366
Echvi_4367: Echvi_4367 - RteC protein., at 5,222,370 to 5,223,209
_4367
Position (kb)
5221
5222 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5220.234 kb on + strand, within Echvi_4363 at 5220.235 kb on - strand, within Echvi_4363 at 5220.235 kb on - strand, within Echvi_4363 at 5220.276 kb on + strand, within Echvi_4363 at 5220.363 kb on + strand, within Echvi_4363 at 5220.363 kb on + strand, within Echvi_4363 at 5220.364 kb on - strand, within Echvi_4363 at 5220.364 kb on - strand, within Echvi_4363 at 5220.525 kb on - strand, within Echvi_4363 at 5221.059 kb on + strand at 5221.059 kb on + strand at 5221.059 kb on + strand at 5221.060 kb on - strand at 5221.142 kb on + strand at 5221.154 kb on - strand at 5221.262 kb on - strand, within Echvi_4364 at 5221.354 kb on + strand, within Echvi_4364 at 5221.355 kb on - strand, within Echvi_4364 at 5221.380 kb on + strand, within Echvi_4364 at 5221.411 kb on + strand, within Echvi_4364 at 5221.412 kb on - strand, within Echvi_4364 at 5221.412 kb on - strand, within Echvi_4364 at 5221.430 kb on + strand, within Echvi_4364 at 5221.466 kb on + strand at 5221.467 kb on - strand at 5221.665 kb on - strand, within Echvi_4365 at 5222.041 kb on + strand, within Echvi_4366 at 5222.041 kb on + strand, within Echvi_4366 at 5222.042 kb on - strand, within Echvi_4366 at 5222.043 kb on + strand, within Echvi_4366 at 5222.044 kb on - strand, within Echvi_4366 at 5222.046 kb on + strand, within Echvi_4366 at 5222.047 kb on - strand, within Echvi_4366 at 5222.391 kb on + strand at 5222.392 kb on - strand at 5222.393 kb on + strand at 5222.393 kb on + strand at 5222.393 kb on + strand at 5222.393 kb on + strand at 5222.393 kb on + strand at 5222.393 kb on + strand at 5222.393 kb on + strand at 5222.393 kb on + strand at 5222.393 kb on + strand at 5222.394 kb on - strand at 5222.394 kb on - strand at 5222.394 kb on - strand at 5222.394 kb on - strand at 5222.394 kb on - strand at 5222.394 kb on - strand at 5222.394 kb on - strand at 5222.394 kb on - strand at 5222.394 kb on - strand at 5222.395 kb on + strand at 5222.395 kb on + strand at 5222.395 kb on + strand at 5222.395 kb on + strand at 5222.395 kb on + strand at 5222.396 kb on - strand at 5222.396 kb on - strand at 5222.396 kb on - strand at 5222.475 kb on - strand, within Echvi_4367 at 5222.477 kb on - strand, within Echvi_4367 at 5222.478 kb on + strand, within Echvi_4367 at 5222.478 kb on + strand, within Echvi_4367
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml remove 5,220,234 + Echvi_4363 0.62 +1.3 5,220,235 - Echvi_4363 0.63 -0.4 5,220,235 - Echvi_4363 0.63 +0.0 5,220,276 + Echvi_4363 0.64 -1.6 5,220,363 + Echvi_4363 0.68 -0.9 5,220,363 + Echvi_4363 0.68 -1.3 5,220,364 - Echvi_4363 0.68 +0.8 5,220,364 - Echvi_4363 0.68 +0.7 5,220,525 - Echvi_4363 0.74 -0.9 5,221,059 + -1.3 5,221,059 + -0.6 5,221,059 + +1.7 5,221,060 - +1.1 5,221,142 + +0.1 5,221,154 - -0.4 5,221,262 - Echvi_4364 0.34 +0.1 5,221,354 + Echvi_4364 0.62 -0.1 5,221,355 - Echvi_4364 0.62 -2.8 5,221,380 + Echvi_4364 0.70 -0.6 5,221,411 + Echvi_4364 0.79 -0.7 5,221,412 - Echvi_4364 0.80 +0.5 5,221,412 - Echvi_4364 0.80 +0.1 5,221,430 + Echvi_4364 0.85 -1.3 5,221,466 + -0.6 5,221,467 - -1.8 5,221,665 - Echvi_4365 0.60 +0.2 5,222,041 + Echvi_4366 0.80 +0.5 5,222,041 + Echvi_4366 0.80 +1.9 5,222,042 - Echvi_4366 0.80 -1.3 5,222,043 + Echvi_4366 0.80 +0.9 5,222,044 - Echvi_4366 0.81 -2.7 5,222,046 + Echvi_4366 0.81 +0.2 5,222,047 - Echvi_4366 0.82 +0.4 5,222,391 + +0.3 5,222,392 - -0.4 5,222,393 + +0.9 5,222,393 + -0.9 5,222,393 + +0.4 5,222,393 + -0.6 5,222,393 + +0.8 5,222,393 + +0.7 5,222,393 + -0.3 5,222,393 + -0.6 5,222,393 + -0.7 5,222,394 - +0.7 5,222,394 - -2.2 5,222,394 - +0.9 5,222,394 - -0.8 5,222,394 - -0.4 5,222,394 - +0.2 5,222,394 - +0.3 5,222,394 - -1.1 5,222,394 - +0.1 5,222,395 + +0.4 5,222,395 + -1.3 5,222,395 + -0.6 5,222,395 + +0.1 5,222,395 + +0.5 5,222,396 - +0.4 5,222,396 - +0.4 5,222,396 - -0.1 5,222,475 - Echvi_4367 0.12 -1.5 5,222,477 - Echvi_4367 0.13 -1.8 5,222,478 + Echvi_4367 0.13 +0.3 5,222,478 + Echvi_4367 0.13 -1.0
Or see this region's nucleotide sequence