Experiment: m.b. Spectinomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4360 and Echvi_4361 are separated by 8 nucleotides Echvi_4361 and Echvi_4362 overlap by 14 nucleotides Echvi_4362 and Echvi_4363 overlap by 4 nucleotides
Echvi_4360: Echvi_4360 - hypothetical protein, at 5,216,736 to 5,217,353
_4360
Echvi_4361: Echvi_4361 - hypothetical protein, at 5,217,362 to 5,218,009
_4361
Echvi_4362: Echvi_4362 - hypothetical protein, at 5,217,996 to 5,218,694
_4362
Echvi_4363: Echvi_4363 - Bacteroides conjugation system ATPase, TraG family, at 5,218,691 to 5,221,159
_4363
Position (kb) 5217
5218
5219 Strain fitness (log2 ratio) -2
-1
0
1 at 5217.057 kb on + strand, within Echvi_4360 at 5217.057 kb on + strand, within Echvi_4360 at 5217.057 kb on + strand, within Echvi_4360 at 5217.057 kb on + strand, within Echvi_4360 at 5217.071 kb on - strand, within Echvi_4360 at 5217.071 kb on - strand, within Echvi_4360 at 5217.092 kb on + strand, within Echvi_4360 at 5217.093 kb on - strand, within Echvi_4360 at 5217.221 kb on - strand, within Echvi_4360 at 5217.340 kb on - strand at 5217.341 kb on + strand at 5217.342 kb on + strand at 5217.353 kb on + strand at 5217.354 kb on - strand at 5217.449 kb on - strand, within Echvi_4361 at 5217.485 kb on + strand, within Echvi_4361 at 5217.495 kb on + strand, within Echvi_4361 at 5217.495 kb on + strand, within Echvi_4361 at 5217.496 kb on - strand, within Echvi_4361 at 5217.496 kb on - strand, within Echvi_4361 at 5217.611 kb on + strand, within Echvi_4361 at 5217.850 kb on - strand, within Echvi_4361 at 5217.873 kb on + strand, within Echvi_4361 at 5217.874 kb on - strand at 5217.874 kb on - strand, within Echvi_4361 at 5217.874 kb on - strand, within Echvi_4361 at 5217.874 kb on - strand, within Echvi_4361 at 5217.989 kb on + strand at 5218.023 kb on + strand at 5218.197 kb on + strand, within Echvi_4362 at 5218.408 kb on + strand, within Echvi_4362 at 5218.597 kb on + strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.781 kb on + strand at 5218.782 kb on - strand at 5218.804 kb on + strand at 5218.806 kb on + strand at 5218.842 kb on + strand at 5219.069 kb on + strand, within Echvi_4363 at 5219.128 kb on - strand, within Echvi_4363 at 5219.128 kb on - strand, within Echvi_4363 at 5219.136 kb on + strand, within Echvi_4363 at 5219.137 kb on - strand, within Echvi_4363 at 5219.353 kb on - strand, within Echvi_4363 at 5219.520 kb on + strand, within Echvi_4363 at 5219.521 kb on - strand, within Echvi_4363 at 5219.521 kb on - strand, within Echvi_4363 at 5219.554 kb on - strand, within Echvi_4363 at 5219.691 kb on + strand, within Echvi_4363 at 5219.691 kb on + strand, within Echvi_4363 at 5219.691 kb on + strand, within Echvi_4363 at 5219.691 kb on + strand, within Echvi_4363 at 5219.692 kb on - strand, within Echvi_4363
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml remove 5,217,057 + Echvi_4360 0.52 +1.5 5,217,057 + Echvi_4360 0.52 -0.7 5,217,057 + Echvi_4360 0.52 -0.2 5,217,057 + Echvi_4360 0.52 -0.6 5,217,071 - Echvi_4360 0.54 -0.6 5,217,071 - Echvi_4360 0.54 -0.6 5,217,092 + Echvi_4360 0.58 -1.1 5,217,093 - Echvi_4360 0.58 +1.4 5,217,221 - Echvi_4360 0.78 +0.1 5,217,340 - -1.0 5,217,341 + -0.1 5,217,342 + -1.4 5,217,353 + +0.2 5,217,354 - -0.4 5,217,449 - Echvi_4361 0.13 -0.1 5,217,485 + Echvi_4361 0.19 -0.2 5,217,495 + Echvi_4361 0.21 -1.1 5,217,495 + Echvi_4361 0.21 -0.9 5,217,496 - Echvi_4361 0.21 -1.3 5,217,496 - Echvi_4361 0.21 -0.6 5,217,611 + Echvi_4361 0.38 -2.5 5,217,850 - Echvi_4361 0.75 -2.1 5,217,873 + Echvi_4361 0.79 +1.4 5,217,874 - +0.7 5,217,874 - Echvi_4361 0.79 +0.9 5,217,874 - Echvi_4361 0.79 -0.9 5,217,874 - Echvi_4361 0.79 -0.3 5,217,989 + -2.2 5,218,023 + +0.5 5,218,197 + Echvi_4362 0.29 +1.7 5,218,408 + Echvi_4362 0.59 +0.8 5,218,597 + Echvi_4362 0.86 +0.0 5,218,598 - Echvi_4362 0.86 -1.0 5,218,598 - Echvi_4362 0.86 -0.6 5,218,598 - Echvi_4362 0.86 -1.5 5,218,598 - Echvi_4362 0.86 -1.4 5,218,781 + +0.9 5,218,782 - -0.1 5,218,804 + -0.3 5,218,806 + +0.7 5,218,842 + +0.7 5,219,069 + Echvi_4363 0.15 -1.3 5,219,128 - Echvi_4363 0.18 -2.1 5,219,128 - Echvi_4363 0.18 -0.3 5,219,136 + Echvi_4363 0.18 -0.4 5,219,137 - Echvi_4363 0.18 -1.3 5,219,353 - Echvi_4363 0.27 -0.3 5,219,520 + Echvi_4363 0.34 -0.7 5,219,521 - Echvi_4363 0.34 -0.4 5,219,521 - Echvi_4363 0.34 -1.9 5,219,554 - Echvi_4363 0.35 -1.3 5,219,691 + Echvi_4363 0.41 -0.5 5,219,691 + Echvi_4363 0.41 -0.4 5,219,691 + Echvi_4363 0.41 -0.2 5,219,691 + Echvi_4363 0.41 +0.6 5,219,692 - Echvi_4363 0.41 +0.8
Or see this region's nucleotide sequence