Experiment: m.b. Spectinomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1587 and Echvi_1588 overlap by 4 nucleotides Echvi_1588 and Echvi_1589 are separated by 8 nucleotides Echvi_1589 and Echvi_1590 are separated by 71 nucleotides
Echvi_1587: Echvi_1587 - Saccharopine dehydrogenase (NADP(+), L-lysine-forming) (EC 1.5.1.8); Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) (EC 1.5.1.9) (from data) , at 1,824,832 to 1,826,046
_1587
Echvi_1588: Echvi_1588 - deoxyribose-phosphate aldolase, at 1,826,043 to 1,826,708
_1588
Echvi_1589: Echvi_1589 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,826,717 to 1,827,991
_1589
Echvi_1590: Echvi_1590 - Na+/phosphate symporter, at 1,828,063 to 1,829,262
_1590
Position (kb)
1826
1827
1828 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1825.777 kb on + strand, within Echvi_1587 at 1825.777 kb on + strand, within Echvi_1587 at 1825.777 kb on + strand, within Echvi_1587 at 1825.778 kb on - strand, within Echvi_1587 at 1825.952 kb on + strand at 1825.996 kb on + strand at 1825.996 kb on + strand at 1825.997 kb on - strand at 1826.057 kb on + strand at 1826.058 kb on - strand at 1826.058 kb on - strand at 1826.058 kb on - strand at 1826.058 kb on - strand at 1826.058 kb on - strand at 1826.061 kb on + strand at 1826.062 kb on - strand at 1826.065 kb on + strand at 1826.065 kb on + strand at 1826.136 kb on + strand, within Echvi_1588 at 1826.137 kb on - strand, within Echvi_1588 at 1826.201 kb on + strand, within Echvi_1588 at 1826.202 kb on - strand, within Echvi_1588 at 1826.202 kb on - strand, within Echvi_1588 at 1826.227 kb on + strand, within Echvi_1588 at 1826.245 kb on - strand, within Echvi_1588 at 1826.345 kb on + strand, within Echvi_1588 at 1826.345 kb on + strand, within Echvi_1588 at 1826.433 kb on + strand, within Echvi_1588 at 1826.465 kb on + strand, within Echvi_1588 at 1826.492 kb on + strand, within Echvi_1588 at 1826.602 kb on + strand, within Echvi_1588 at 1826.603 kb on - strand, within Echvi_1588 at 1826.699 kb on - strand at 1826.738 kb on - strand at 1826.744 kb on + strand at 1826.744 kb on + strand at 1826.744 kb on + strand at 1826.797 kb on + strand at 1826.797 kb on + strand at 1826.798 kb on - strand at 1826.798 kb on - strand at 1826.846 kb on - strand, within Echvi_1589 at 1826.846 kb on - strand, within Echvi_1589 at 1826.846 kb on - strand, within Echvi_1589 at 1826.846 kb on - strand, within Echvi_1589 at 1826.846 kb on - strand, within Echvi_1589 at 1826.862 kb on + strand, within Echvi_1589 at 1826.862 kb on + strand, within Echvi_1589 at 1826.862 kb on + strand, within Echvi_1589 at 1826.862 kb on + strand, within Echvi_1589 at 1826.863 kb on - strand, within Echvi_1589 at 1826.863 kb on - strand, within Echvi_1589 at 1826.863 kb on - strand, within Echvi_1589 at 1826.899 kb on + strand, within Echvi_1589 at 1826.910 kb on - strand, within Echvi_1589 at 1826.926 kb on + strand, within Echvi_1589 at 1826.926 kb on + strand, within Echvi_1589 at 1826.961 kb on - strand, within Echvi_1589 at 1826.961 kb on - strand, within Echvi_1589 at 1827.008 kb on - strand, within Echvi_1589 at 1827.044 kb on + strand, within Echvi_1589 at 1827.063 kb on + strand, within Echvi_1589 at 1827.064 kb on - strand, within Echvi_1589 at 1827.068 kb on + strand, within Echvi_1589 at 1827.122 kb on + strand, within Echvi_1589 at 1827.123 kb on - strand, within Echvi_1589 at 1827.213 kb on + strand, within Echvi_1589 at 1827.213 kb on + strand, within Echvi_1589 at 1827.222 kb on + strand, within Echvi_1589 at 1827.222 kb on + strand, within Echvi_1589 at 1827.222 kb on + strand, within Echvi_1589 at 1827.223 kb on - strand, within Echvi_1589 at 1827.223 kb on - strand, within Echvi_1589 at 1827.266 kb on - strand, within Echvi_1589 at 1827.289 kb on - strand, within Echvi_1589 at 1827.289 kb on - strand, within Echvi_1589 at 1827.320 kb on - strand, within Echvi_1589 at 1827.330 kb on - strand, within Echvi_1589 at 1827.354 kb on - strand, within Echvi_1589 at 1827.354 kb on - strand, within Echvi_1589 at 1827.378 kb on + strand, within Echvi_1589 at 1827.387 kb on + strand, within Echvi_1589 at 1827.387 kb on + strand, within Echvi_1589 at 1827.437 kb on - strand, within Echvi_1589 at 1827.452 kb on - strand, within Echvi_1589 at 1827.476 kb on + strand, within Echvi_1589 at 1827.476 kb on + strand, within Echvi_1589 at 1827.477 kb on - strand, within Echvi_1589 at 1827.542 kb on + strand, within Echvi_1589 at 1827.544 kb on + strand, within Echvi_1589 at 1827.545 kb on - strand, within Echvi_1589 at 1827.587 kb on + strand, within Echvi_1589 at 1827.588 kb on - strand, within Echvi_1589 at 1827.641 kb on + strand, within Echvi_1589 at 1827.684 kb on - strand, within Echvi_1589 at 1827.801 kb on + strand, within Echvi_1589 at 1827.802 kb on - strand, within Echvi_1589 at 1827.804 kb on + strand, within Echvi_1589 at 1827.804 kb on + strand, within Echvi_1589 at 1827.804 kb on + strand, within Echvi_1589 at 1827.805 kb on - strand, within Echvi_1589 at 1827.805 kb on - strand, within Echvi_1589 at 1827.805 kb on - strand, within Echvi_1589 at 1827.805 kb on - strand, within Echvi_1589 at 1827.818 kb on + strand, within Echvi_1589 at 1827.847 kb on + strand, within Echvi_1589 at 1827.847 kb on + strand, within Echvi_1589 at 1827.915 kb on + strand at 1828.090 kb on - strand at 1828.208 kb on + strand, within Echvi_1590 at 1828.209 kb on - strand, within Echvi_1590 at 1828.560 kb on + strand, within Echvi_1590 at 1828.560 kb on + strand, within Echvi_1590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml remove 1,825,777 + Echvi_1587 0.78 -1.0 1,825,777 + Echvi_1587 0.78 -0.8 1,825,777 + Echvi_1587 0.78 +0.3 1,825,778 - Echvi_1587 0.78 -0.0 1,825,952 + +0.3 1,825,996 + +0.7 1,825,996 + +0.2 1,825,997 - +0.3 1,826,057 + -1.7 1,826,058 - +0.8 1,826,058 - +0.2 1,826,058 - +0.8 1,826,058 - -0.8 1,826,058 - +0.0 1,826,061 + +0.2 1,826,062 - -1.9 1,826,065 + -1.6 1,826,065 + -0.9 1,826,136 + Echvi_1588 0.14 -0.5 1,826,137 - Echvi_1588 0.14 +0.0 1,826,201 + Echvi_1588 0.24 -0.4 1,826,202 - Echvi_1588 0.24 +0.9 1,826,202 - Echvi_1588 0.24 -0.6 1,826,227 + Echvi_1588 0.28 -1.2 1,826,245 - Echvi_1588 0.30 -1.6 1,826,345 + Echvi_1588 0.45 -0.7 1,826,345 + Echvi_1588 0.45 +1.6 1,826,433 + Echvi_1588 0.59 +2.8 1,826,465 + Echvi_1588 0.63 +0.3 1,826,492 + Echvi_1588 0.67 +1.3 1,826,602 + Echvi_1588 0.84 -0.7 1,826,603 - Echvi_1588 0.84 -1.2 1,826,699 - -0.2 1,826,738 - +0.7 1,826,744 + -0.5 1,826,744 + +0.1 1,826,744 + -1.0 1,826,797 + +1.1 1,826,797 + -1.0 1,826,798 - +0.4 1,826,798 - -0.0 1,826,846 - Echvi_1589 0.10 -0.4 1,826,846 - Echvi_1589 0.10 -1.6 1,826,846 - Echvi_1589 0.10 +0.3 1,826,846 - Echvi_1589 0.10 -1.6 1,826,846 - Echvi_1589 0.10 -0.2 1,826,862 + Echvi_1589 0.11 +0.1 1,826,862 + Echvi_1589 0.11 +0.1 1,826,862 + Echvi_1589 0.11 -0.5 1,826,862 + Echvi_1589 0.11 -0.2 1,826,863 - Echvi_1589 0.11 -1.9 1,826,863 - Echvi_1589 0.11 +0.3 1,826,863 - Echvi_1589 0.11 +0.4 1,826,899 + Echvi_1589 0.14 +3.1 1,826,910 - Echvi_1589 0.15 -0.5 1,826,926 + Echvi_1589 0.16 +0.3 1,826,926 + Echvi_1589 0.16 +1.3 1,826,961 - Echvi_1589 0.19 +1.1 1,826,961 - Echvi_1589 0.19 +1.6 1,827,008 - Echvi_1589 0.23 -1.6 1,827,044 + Echvi_1589 0.26 -0.1 1,827,063 + Echvi_1589 0.27 +0.7 1,827,064 - Echvi_1589 0.27 +0.4 1,827,068 + Echvi_1589 0.28 +0.8 1,827,122 + Echvi_1589 0.32 -0.5 1,827,123 - Echvi_1589 0.32 +1.4 1,827,213 + Echvi_1589 0.39 +1.3 1,827,213 + Echvi_1589 0.39 -1.2 1,827,222 + Echvi_1589 0.40 -0.3 1,827,222 + Echvi_1589 0.40 +2.2 1,827,222 + Echvi_1589 0.40 +0.0 1,827,223 - Echvi_1589 0.40 +1.8 1,827,223 - Echvi_1589 0.40 +0.1 1,827,266 - Echvi_1589 0.43 -0.6 1,827,289 - Echvi_1589 0.45 +0.5 1,827,289 - Echvi_1589 0.45 -1.0 1,827,320 - Echvi_1589 0.47 +1.1 1,827,330 - Echvi_1589 0.48 +0.4 1,827,354 - Echvi_1589 0.50 -0.1 1,827,354 - Echvi_1589 0.50 -0.4 1,827,378 + Echvi_1589 0.52 -0.2 1,827,387 + Echvi_1589 0.53 +0.1 1,827,387 + Echvi_1589 0.53 +0.5 1,827,437 - Echvi_1589 0.56 +0.4 1,827,452 - Echvi_1589 0.58 -0.5 1,827,476 + Echvi_1589 0.60 +0.8 1,827,476 + Echvi_1589 0.60 -0.0 1,827,477 - Echvi_1589 0.60 -0.1 1,827,542 + Echvi_1589 0.65 -0.1 1,827,544 + Echvi_1589 0.65 -1.3 1,827,545 - Echvi_1589 0.65 -1.7 1,827,587 + Echvi_1589 0.68 +0.8 1,827,588 - Echvi_1589 0.68 +0.9 1,827,641 + Echvi_1589 0.72 +0.3 1,827,684 - Echvi_1589 0.76 -0.0 1,827,801 + Echvi_1589 0.85 -0.7 1,827,802 - Echvi_1589 0.85 +0.3 1,827,804 + Echvi_1589 0.85 -0.5 1,827,804 + Echvi_1589 0.85 +1.2 1,827,804 + Echvi_1589 0.85 -0.3 1,827,805 - Echvi_1589 0.85 -1.0 1,827,805 - Echvi_1589 0.85 +1.7 1,827,805 - Echvi_1589 0.85 -0.5 1,827,805 - Echvi_1589 0.85 -0.9 1,827,818 + Echvi_1589 0.86 +1.2 1,827,847 + Echvi_1589 0.89 +0.1 1,827,847 + Echvi_1589 0.89 -0.1 1,827,915 + -0.1 1,828,090 - +0.2 1,828,208 + Echvi_1590 0.12 -1.3 1,828,209 - Echvi_1590 0.12 -0.2 1,828,560 + Echvi_1590 0.41 +0.8 1,828,560 + Echvi_1590 0.41 +0.3
Or see this region's nucleotide sequence