Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0741

Experiment: m.b. Spectinomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0739 and Echvi_0740 are separated by 62 nucleotidesEchvi_0740 and Echvi_0741 are separated by 112 nucleotidesEchvi_0741 and Echvi_0742 are separated by 5 nucleotidesEchvi_0742 and Echvi_0743 are separated by 57 nucleotides Echvi_0739: Echvi_0739 - hypothetical protein, at 828,745 to 829,599 _0739 Echvi_0740: Echvi_0740 - Lysophospholipase L1 and related esterases, at 829,662 to 830,321 _0740 Echvi_0741: Echvi_0741 - Putative NADPH-quinone reductase (modulator of drug activity B), at 830,434 to 831,012 _0741 Echvi_0742: Echvi_0742 - hypothetical protein, at 831,018 to 831,356 _0742 Echvi_0743: Echvi_0743 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 831,414 to 831,995 _0743 Position (kb) 830 831 832Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 829.441 kb on + strandat 829.442 kb on - strand, within Echvi_0739at 829.463 kb on + strand, within Echvi_0739at 829.464 kb on - strand, within Echvi_0739at 829.464 kb on - strand, within Echvi_0739at 829.484 kb on - strand, within Echvi_0739at 829.559 kb on + strandat 829.560 kb on - strandat 829.563 kb on + strandat 829.599 kb on + strandat 829.599 kb on + strandat 829.603 kb on + strandat 829.603 kb on + strandat 829.638 kb on + strandat 829.644 kb on + strandat 829.644 kb on + strandat 829.645 kb on - strandat 829.660 kb on - strandat 829.711 kb on + strandat 829.754 kb on + strandat 829.755 kb on - strand, within Echvi_0740at 829.757 kb on + strand, within Echvi_0740at 829.758 kb on - strand, within Echvi_0740at 829.854 kb on + strand, within Echvi_0740at 829.908 kb on + strand, within Echvi_0740at 829.908 kb on + strand, within Echvi_0740at 830.013 kb on + strand, within Echvi_0740at 830.014 kb on - strand, within Echvi_0740at 830.014 kb on - strand, within Echvi_0740at 830.015 kb on + strand, within Echvi_0740at 830.016 kb on - strand, within Echvi_0740at 830.038 kb on - strand, within Echvi_0740at 830.038 kb on - strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.092 kb on - strand, within Echvi_0740at 830.092 kb on - strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.146 kb on + strand, within Echvi_0740at 830.146 kb on + strand, within Echvi_0740at 830.147 kb on - strand, within Echvi_0740at 830.147 kb on - strand, within Echvi_0740at 830.192 kb on + strand, within Echvi_0740at 830.315 kb on + strandat 830.320 kb on - strandat 830.320 kb on - strandat 830.375 kb on + strandat 830.375 kb on + strandat 830.380 kb on + strandat 830.380 kb on + strandat 830.381 kb on - strandat 830.390 kb on + strandat 830.391 kb on - strandat 830.391 kb on - strandat 830.424 kb on - strandat 830.435 kb on + strandat 830.436 kb on - strandat 830.436 kb on - strandat 830.466 kb on + strandat 830.467 kb on - strandat 830.545 kb on + strand, within Echvi_0741at 830.545 kb on + strand, within Echvi_0741at 830.577 kb on + strand, within Echvi_0741at 830.577 kb on + strand, within Echvi_0741at 830.610 kb on - strand, within Echvi_0741at 830.662 kb on + strand, within Echvi_0741at 830.677 kb on + strand, within Echvi_0741at 830.698 kb on - strand, within Echvi_0741at 830.745 kb on + strand, within Echvi_0741at 830.745 kb on + strand, within Echvi_0741at 830.746 kb on - strand, within Echvi_0741at 830.746 kb on - strand, within Echvi_0741at 830.824 kb on + strand, within Echvi_0741at 830.825 kb on - strand, within Echvi_0741at 830.862 kb on - strand, within Echvi_0741at 830.862 kb on - strand, within Echvi_0741at 830.866 kb on + strand, within Echvi_0741at 830.866 kb on + strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.966 kb on + strandat 830.967 kb on - strandat 830.967 kb on - strandat 831.001 kb on + strandat 831.004 kb on - strandat 831.053 kb on + strand, within Echvi_0742at 831.054 kb on - strand, within Echvi_0742at 831.085 kb on + strand, within Echvi_0742at 831.086 kb on - strand, within Echvi_0742at 831.132 kb on - strand, within Echvi_0742at 831.148 kb on - strand, within Echvi_0742at 831.148 kb on - strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.184 kb on - strand, within Echvi_0742at 831.184 kb on - strand, within Echvi_0742at 831.185 kb on + strand, within Echvi_0742at 831.214 kb on - strand, within Echvi_0742at 831.220 kb on + strand, within Echvi_0742at 831.221 kb on - strand, within Echvi_0742at 831.226 kb on + strand, within Echvi_0742at 831.227 kb on - strand, within Echvi_0742at 831.228 kb on + strand, within Echvi_0742at 831.229 kb on - strand, within Echvi_0742at 831.229 kb on - strand, within Echvi_0742at 831.248 kb on - strand, within Echvi_0742at 831.248 kb on - strand, within Echvi_0742at 831.268 kb on + strand, within Echvi_0742at 831.273 kb on + strand, within Echvi_0742at 831.339 kb on + strandat 831.340 kb on - strandat 831.408 kb on + strandat 831.409 kb on - strandat 831.410 kb on + strandat 831.410 kb on + strandat 831.411 kb on - strandat 831.411 kb on - strandat 831.472 kb on + strandat 831.473 kb on - strand, within Echvi_0743at 831.519 kb on + strand, within Echvi_0743at 831.520 kb on - strand, within Echvi_0743at 831.535 kb on + strand, within Echvi_0743at 831.536 kb on - strand, within Echvi_0743at 831.569 kb on + strand, within Echvi_0743at 831.640 kb on + strand, within Echvi_0743at 831.665 kb on + strand, within Echvi_0743at 831.666 kb on - strand, within Echvi_0743at 831.712 kb on + strand, within Echvi_0743at 831.712 kb on + strand, within Echvi_0743at 831.713 kb on - strand, within Echvi_0743at 831.713 kb on - strand, within Echvi_0743at 831.744 kb on + strand, within Echvi_0743at 831.745 kb on - strand, within Echvi_0743at 831.811 kb on + strand, within Echvi_0743at 831.812 kb on - strand, within Echvi_0743at 831.812 kb on - strand, within Echvi_0743at 831.814 kb on + strand, within Echvi_0743at 831.834 kb on + strand, within Echvi_0743at 831.879 kb on + strand, within Echvi_0743at 831.880 kb on - strand, within Echvi_0743at 831.912 kb on - strand, within Echvi_0743at 831.955 kb on + strandat 831.956 kb on - strandat 831.956 kb on - strandat 832.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml
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829,441 + +1.9
829,442 - Echvi_0739 0.82 +0.1
829,463 + Echvi_0739 0.84 +2.9
829,464 - Echvi_0739 0.84 +0.1
829,464 - Echvi_0739 0.84 -0.8
829,484 - Echvi_0739 0.86 -0.4
829,559 + -0.6
829,560 - +0.2
829,563 + -0.9
829,599 + +0.3
829,599 + -0.8
829,603 + +1.1
829,603 + +0.6
829,638 + +0.1
829,644 + +1.9
829,644 + -0.2
829,645 - -1.4
829,660 - -0.0
829,711 + -0.5
829,754 + -0.4
829,755 - Echvi_0740 0.14 +0.1
829,757 + Echvi_0740 0.14 -1.1
829,758 - Echvi_0740 0.15 -0.8
829,854 + Echvi_0740 0.29 -1.1
829,908 + Echvi_0740 0.37 -0.0
829,908 + Echvi_0740 0.37 +1.9
830,013 + Echvi_0740 0.53 -0.5
830,014 - Echvi_0740 0.53 +0.2
830,014 - Echvi_0740 0.53 -0.5
830,015 + Echvi_0740 0.53 +0.5
830,016 - Echvi_0740 0.54 +0.0
830,038 - Echvi_0740 0.57 +0.5
830,038 - Echvi_0740 0.57 -0.7
830,089 + Echvi_0740 0.65 +1.9
830,089 + Echvi_0740 0.65 -0.2
830,089 + Echvi_0740 0.65 -0.3
830,089 + Echvi_0740 0.65 +0.1
830,090 - Echvi_0740 0.65 +0.9
830,090 - Echvi_0740 0.65 -0.7
830,090 - Echvi_0740 0.65 -0.5
830,090 - Echvi_0740 0.65 +0.7
830,091 + Echvi_0740 0.65 -0.2
830,091 + Echvi_0740 0.65 -0.3
830,091 + Echvi_0740 0.65 +0.7
830,091 + Echvi_0740 0.65 -0.6
830,092 - Echvi_0740 0.65 +0.1
830,092 - Echvi_0740 0.65 -0.3
830,095 + Echvi_0740 0.66 +0.6
830,095 + Echvi_0740 0.66 +0.5
830,095 + Echvi_0740 0.66 -1.1
830,095 + Echvi_0740 0.66 -0.2
830,095 + Echvi_0740 0.66 -0.3
830,095 + Echvi_0740 0.66 -0.2
830,095 + Echvi_0740 0.66 +0.9
830,095 + Echvi_0740 0.66 +0.5
830,096 - Echvi_0740 0.66 +0.2
830,096 - Echvi_0740 0.66 +0.3
830,096 - Echvi_0740 0.66 -0.9
830,096 - Echvi_0740 0.66 +0.9
830,096 - Echvi_0740 0.66 -0.7
830,096 - Echvi_0740 0.66 +0.3
830,096 - Echvi_0740 0.66 -0.4
830,096 - Echvi_0740 0.66 +0.5
830,096 - Echvi_0740 0.66 +1.0
830,096 - Echvi_0740 0.66 +0.7
830,146 + Echvi_0740 0.73 -1.3
830,146 + Echvi_0740 0.73 -1.2
830,147 - Echvi_0740 0.73 +0.7
830,147 - Echvi_0740 0.73 +0.6
830,192 + Echvi_0740 0.80 -1.8
830,315 + -0.4
830,320 - +0.4
830,320 - -0.9
830,375 + +1.9
830,375 + +1.1
830,380 + -0.0
830,380 + +0.4
830,381 - -1.9
830,390 + -0.1
830,391 - -3.3
830,391 - -0.7
830,424 - +1.3
830,435 + +0.3
830,436 - +0.3
830,436 - +2.4
830,466 + -0.0
830,467 - -0.3
830,545 + Echvi_0741 0.19 -0.6
830,545 + Echvi_0741 0.19 -0.6
830,577 + Echvi_0741 0.25 -1.3
830,577 + Echvi_0741 0.25 -0.2
830,610 - Echvi_0741 0.30 -1.4
830,662 + Echvi_0741 0.39 -0.3
830,677 + Echvi_0741 0.42 -0.5
830,698 - Echvi_0741 0.46 -0.2
830,745 + Echvi_0741 0.54 -0.0
830,745 + Echvi_0741 0.54 +0.1
830,746 - Echvi_0741 0.54 -0.4
830,746 - Echvi_0741 0.54 +0.7
830,824 + Echvi_0741 0.67 -0.3
830,825 - Echvi_0741 0.68 -0.1
830,862 - Echvi_0741 0.74 +0.6
830,862 - Echvi_0741 0.74 -0.1
830,866 + Echvi_0741 0.75 +0.3
830,866 + Echvi_0741 0.75 -0.4
830,867 - Echvi_0741 0.75 -1.1
830,867 - Echvi_0741 0.75 -0.4
830,867 - Echvi_0741 0.75 -1.2
830,942 + Echvi_0741 0.88 +0.3
830,942 + Echvi_0741 0.88 -1.6
830,942 + Echvi_0741 0.88 -1.3
830,942 + Echvi_0741 0.88 -0.4
830,966 + +0.7
830,967 - +0.5
830,967 - +1.0
831,001 + +0.3
831,004 - +0.8
831,053 + Echvi_0742 0.10 -0.5
831,054 - Echvi_0742 0.11 +0.6
831,085 + Echvi_0742 0.20 -1.9
831,086 - Echvi_0742 0.20 +0.7
831,132 - Echvi_0742 0.34 -0.2
831,148 - Echvi_0742 0.38 -0.7
831,148 - Echvi_0742 0.38 +0.2
831,183 + Echvi_0742 0.49 +0.9
831,183 + Echvi_0742 0.49 +0.3
831,183 + Echvi_0742 0.49 -0.9
831,183 + Echvi_0742 0.49 +0.6
831,184 - Echvi_0742 0.49 -0.2
831,184 - Echvi_0742 0.49 -0.3
831,185 + Echvi_0742 0.49 -0.9
831,214 - Echvi_0742 0.58 +0.5
831,220 + Echvi_0742 0.60 +0.4
831,221 - Echvi_0742 0.60 +0.5
831,226 + Echvi_0742 0.61 +0.5
831,227 - Echvi_0742 0.62 -0.9
831,228 + Echvi_0742 0.62 +0.3
831,229 - Echvi_0742 0.62 -0.4
831,229 - Echvi_0742 0.62 -0.4
831,248 - Echvi_0742 0.68 -0.1
831,248 - Echvi_0742 0.68 +0.9
831,268 + Echvi_0742 0.74 -0.4
831,273 + Echvi_0742 0.75 -0.6
831,339 + +1.0
831,340 - +0.3
831,408 + -0.3
831,409 - -0.7
831,410 + +0.0
831,410 + +0.1
831,411 - -1.8
831,411 - +0.6
831,472 + +0.5
831,473 - Echvi_0743 0.10 -0.7
831,519 + Echvi_0743 0.18 +0.1
831,520 - Echvi_0743 0.18 +0.9
831,535 + Echvi_0743 0.21 -0.1
831,536 - Echvi_0743 0.21 -0.3
831,569 + Echvi_0743 0.27 +1.4
831,640 + Echvi_0743 0.39 +0.3
831,665 + Echvi_0743 0.43 -0.6
831,666 - Echvi_0743 0.43 -0.9
831,712 + Echvi_0743 0.51 +0.5
831,712 + Echvi_0743 0.51 -0.7
831,713 - Echvi_0743 0.51 +0.1
831,713 - Echvi_0743 0.51 -0.1
831,744 + Echvi_0743 0.57 +0.2
831,745 - Echvi_0743 0.57 +0.3
831,811 + Echvi_0743 0.68 -0.4
831,812 - Echvi_0743 0.68 +0.4
831,812 - Echvi_0743 0.68 +0.1
831,814 + Echvi_0743 0.69 +0.1
831,834 + Echvi_0743 0.72 +0.4
831,879 + Echvi_0743 0.80 +0.7
831,880 - Echvi_0743 0.80 -1.3
831,912 - Echvi_0743 0.86 -0.3
831,955 + +0.6
831,956 - -0.3
831,956 - +1.9
832,004 + -0.5

Or see this region's nucleotide sequence