Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0589

Experiment: m.b. Spectinomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0587 and Echvi_0588 overlap by 4 nucleotidesEchvi_0588 and Echvi_0589 are separated by 76 nucleotidesEchvi_0589 and Echvi_0590 are separated by 152 nucleotides Echvi_0587: Echvi_0587 - ABC-type Na+ efflux pump, permease component, at 664,823 to 666,133 _0587 Echvi_0588: Echvi_0588 - ABC-type uncharacterized transport system, ATPase component, at 666,130 to 667,029 _0588 Echvi_0589: Echvi_0589 - hypothetical protein, at 667,106 to 667,942 _0589 Echvi_0590: Echvi_0590 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 668,095 to 669,210 _0590 Position (kb) 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 666.128 kb on - strandat 666.284 kb on + strand, within Echvi_0588at 666.284 kb on + strand, within Echvi_0588at 666.343 kb on + strand, within Echvi_0588at 666.344 kb on - strand, within Echvi_0588at 666.349 kb on - strand, within Echvi_0588at 666.355 kb on - strand, within Echvi_0588at 666.429 kb on + strand, within Echvi_0588at 666.429 kb on + strand, within Echvi_0588at 666.429 kb on + strand, within Echvi_0588at 666.449 kb on - strand, within Echvi_0588at 666.468 kb on + strand, within Echvi_0588at 666.469 kb on - strand, within Echvi_0588at 666.522 kb on + strand, within Echvi_0588at 666.744 kb on - strand, within Echvi_0588at 666.744 kb on - strand, within Echvi_0588at 666.776 kb on + strand, within Echvi_0588at 666.816 kb on + strand, within Echvi_0588at 666.861 kb on + strand, within Echvi_0588at 666.861 kb on + strand, within Echvi_0588at 666.895 kb on + strand, within Echvi_0588at 666.919 kb on - strand, within Echvi_0588at 667.017 kb on + strandat 667.060 kb on + strandat 667.060 kb on + strandat 667.060 kb on + strandat 667.060 kb on + strandat 667.061 kb on - strandat 667.061 kb on - strandat 667.061 kb on - strandat 667.074 kb on - strandat 667.107 kb on + strandat 667.112 kb on + strandat 667.134 kb on - strandat 667.269 kb on + strand, within Echvi_0589at 667.297 kb on + strand, within Echvi_0589at 667.297 kb on + strand, within Echvi_0589at 667.298 kb on - strand, within Echvi_0589at 667.299 kb on + strand, within Echvi_0589at 667.302 kb on - strand, within Echvi_0589at 667.387 kb on - strand, within Echvi_0589at 667.406 kb on - strand, within Echvi_0589at 667.521 kb on - strand, within Echvi_0589at 667.532 kb on - strand, within Echvi_0589at 667.623 kb on + strand, within Echvi_0589at 667.624 kb on - strand, within Echvi_0589at 667.624 kb on - strand, within Echvi_0589at 667.624 kb on - strand, within Echvi_0589at 667.628 kb on - strand, within Echvi_0589at 667.735 kb on + strand, within Echvi_0589at 667.760 kb on - strand, within Echvi_0589at 667.770 kb on + strand, within Echvi_0589at 667.789 kb on + strand, within Echvi_0589at 667.790 kb on - strand, within Echvi_0589at 667.866 kb on + strandat 667.867 kb on - strandat 667.947 kb on - strandat 667.947 kb on - strandat 667.966 kb on + strandat 667.967 kb on - strandat 667.980 kb on - strandat 667.999 kb on + strandat 668.000 kb on - strandat 668.000 kb on - strandat 668.011 kb on - strandat 668.075 kb on + strandat 668.081 kb on + strandat 668.081 kb on + strandat 668.081 kb on + strandat 668.081 kb on + strandat 668.081 kb on + strandat 668.081 kb on + strandat 668.081 kb on + strandat 668.081 kb on + strandat 668.081 kb on + strandat 668.082 kb on - strandat 668.082 kb on - strandat 668.366 kb on - strand, within Echvi_0590at 668.402 kb on + strand, within Echvi_0590at 668.403 kb on - strandat 668.411 kb on + strand, within Echvi_0590at 668.411 kb on + strand, within Echvi_0590at 668.443 kb on - strand, within Echvi_0590

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml
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666,128 - -0.1
666,284 + Echvi_0588 0.17 -1.1
666,284 + Echvi_0588 0.17 +1.6
666,343 + Echvi_0588 0.24 -0.8
666,344 - Echvi_0588 0.24 +0.6
666,349 - Echvi_0588 0.24 +0.6
666,355 - Echvi_0588 0.25 +0.1
666,429 + Echvi_0588 0.33 +1.0
666,429 + Echvi_0588 0.33 -0.6
666,429 + Echvi_0588 0.33 +0.1
666,449 - Echvi_0588 0.35 +0.1
666,468 + Echvi_0588 0.38 -1.3
666,469 - Echvi_0588 0.38 -1.2
666,522 + Echvi_0588 0.44 -0.3
666,744 - Echvi_0588 0.68 -0.0
666,744 - Echvi_0588 0.68 -0.1
666,776 + Echvi_0588 0.72 -0.5
666,816 + Echvi_0588 0.76 +0.8
666,861 + Echvi_0588 0.81 +0.3
666,861 + Echvi_0588 0.81 +0.2
666,895 + Echvi_0588 0.85 -0.1
666,919 - Echvi_0588 0.88 +0.9
667,017 + -0.5
667,060 + +0.9
667,060 + +0.7
667,060 + -0.8
667,060 + -0.4
667,061 - -1.4
667,061 - -0.2
667,061 - -0.1
667,074 - -0.8
667,107 + -0.1
667,112 + -1.1
667,134 - -0.7
667,269 + Echvi_0589 0.19 +0.4
667,297 + Echvi_0589 0.23 -2.1
667,297 + Echvi_0589 0.23 -0.4
667,298 - Echvi_0589 0.23 -1.7
667,299 + Echvi_0589 0.23 -1.0
667,302 - Echvi_0589 0.23 +3.9
667,387 - Echvi_0589 0.34 -0.4
667,406 - Echvi_0589 0.36 -0.2
667,521 - Echvi_0589 0.50 -0.5
667,532 - Echvi_0589 0.51 -0.5
667,623 + Echvi_0589 0.62 -1.3
667,624 - Echvi_0589 0.62 +1.3
667,624 - Echvi_0589 0.62 -2.1
667,624 - Echvi_0589 0.62 -1.2
667,628 - Echvi_0589 0.62 -1.3
667,735 + Echvi_0589 0.75 -1.2
667,760 - Echvi_0589 0.78 +0.5
667,770 + Echvi_0589 0.79 -0.7
667,789 + Echvi_0589 0.82 +0.3
667,790 - Echvi_0589 0.82 -0.7
667,866 + -0.5
667,867 - +0.9
667,947 - -1.1
667,947 - -0.7
667,966 + -1.0
667,967 - -1.1
667,980 - +0.5
667,999 + +0.9
668,000 - +1.1
668,000 - +0.4
668,011 - +0.6
668,075 + +0.7
668,081 + -0.6
668,081 + +0.5
668,081 + +1.2
668,081 + +0.1
668,081 + +0.9
668,081 + -0.4
668,081 + -1.4
668,081 + -1.1
668,081 + +1.3
668,082 - +0.1
668,082 - +1.3
668,366 - Echvi_0590 0.24 +0.9
668,402 + Echvi_0590 0.28 +0.8
668,403 - +1.9
668,411 + Echvi_0590 0.28 -1.3
668,411 + Echvi_0590 0.28 -2.5
668,443 - Echvi_0590 0.31 -1.8

Or see this region's nucleotide sequence