Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0395

Experiment: m.b. Spectinomycin 0.12 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0392 and Echvi_0393 are separated by 32 nucleotidesEchvi_0393 and Echvi_0394 overlap by 61 nucleotidesEchvi_0394 and Echvi_0395 are separated by 207 nucleotidesEchvi_0395 and Echvi_0396 are separated by 360 nucleotides Echvi_0392: Echvi_0392 - DNA primase (bacterial type), at 417,548 to 418,410 _0392 Echvi_0393: Echvi_0393 - hypothetical protein, at 418,443 to 418,616 _0393 Echvi_0394: Echvi_0394 - hypothetical protein, at 418,556 to 418,837 _0394 Echvi_0395: Echvi_0395 - DNA repair proteins, at 419,045 to 419,515 _0395 Echvi_0396: Echvi_0396 - Transcriptional regulators, at 419,876 to 420,922 _0396 Position (kb) 419 420Strain fitness (log2 ratio) -2 -1 0 1 2 3at 418.141 kb on - strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.149 kb on + strand, within Echvi_0392at 418.150 kb on - strand, within Echvi_0392at 418.160 kb on + strand, within Echvi_0392at 418.160 kb on + strand, within Echvi_0392at 418.161 kb on - strand, within Echvi_0392at 418.233 kb on + strand, within Echvi_0392at 418.233 kb on + strand, within Echvi_0392at 418.234 kb on - strand, within Echvi_0392at 418.256 kb on - strand, within Echvi_0392at 418.278 kb on + strand, within Echvi_0392at 418.323 kb on - strand, within Echvi_0392at 418.413 kb on + strandat 418.517 kb on - strand, within Echvi_0393at 418.517 kb on - strand, within Echvi_0393at 418.517 kb on - strand, within Echvi_0393at 418.519 kb on + strand, within Echvi_0393at 418.519 kb on + strand, within Echvi_0393at 418.520 kb on - strand, within Echvi_0393at 418.520 kb on - strand, within Echvi_0393at 418.525 kb on + strand, within Echvi_0393at 418.545 kb on - strand, within Echvi_0393at 418.931 kb on + strandat 418.935 kb on + strandat 418.935 kb on + strandat 418.936 kb on - strandat 418.943 kb on + strandat 418.944 kb on - strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.096 kb on + strand, within Echvi_0395at 419.096 kb on + strand, within Echvi_0395at 419.183 kb on - strand, within Echvi_0395at 419.224 kb on + strand, within Echvi_0395at 419.665 kb on + strandat 419.693 kb on + strandat 419.701 kb on + strandat 419.720 kb on + strandat 419.721 kb on - strandat 419.722 kb on + strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.726 kb on + strandat 419.726 kb on + strandat 419.726 kb on + strandat 419.731 kb on - strandat 419.731 kb on - strandat 419.736 kb on + strandat 419.749 kb on + strandat 419.759 kb on + strandat 419.806 kb on - strandat 419.827 kb on - strandat 419.829 kb on - strandat 419.829 kb on - strandat 419.850 kb on + strandat 419.851 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.914 kb on + strandat 420.020 kb on - strand, within Echvi_0396at 420.025 kb on + strand, within Echvi_0396at 420.028 kb on - strand, within Echvi_0396at 420.036 kb on - strand, within Echvi_0396at 420.036 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.047 kb on + strand, within Echvi_0396at 420.085 kb on + strand, within Echvi_0396at 420.086 kb on - strand, within Echvi_0396at 420.120 kb on + strand, within Echvi_0396at 420.137 kb on - strand, within Echvi_0396at 420.231 kb on + strand, within Echvi_0396at 420.232 kb on - strand, within Echvi_0396at 420.235 kb on + strand, within Echvi_0396at 420.236 kb on - strand, within Echvi_0396at 420.236 kb on - strand, within Echvi_0396at 420.257 kb on + strand, within Echvi_0396at 420.257 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.319 kb on + strand, within Echvi_0396at 420.340 kb on - strand, within Echvi_0396at 420.362 kb on + strand, within Echvi_0396at 420.447 kb on + strand, within Echvi_0396at 420.460 kb on + strand, within Echvi_0396at 420.473 kb on + strand, within Echvi_0396at 420.473 kb on + strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.481 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.499 kb on - strand, within Echvi_0396

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml
remove
418,141 - Echvi_0392 0.69 +0.7
418,146 + Echvi_0392 0.69 -0.2
418,146 + Echvi_0392 0.69 +0.7
418,146 + Echvi_0392 0.69 +0.3
418,149 + Echvi_0392 0.70 -0.2
418,150 - Echvi_0392 0.70 -0.7
418,160 + Echvi_0392 0.71 +1.1
418,160 + Echvi_0392 0.71 -0.4
418,161 - Echvi_0392 0.71 -1.2
418,233 + Echvi_0392 0.79 +0.2
418,233 + Echvi_0392 0.79 +0.3
418,234 - Echvi_0392 0.79 +0.1
418,256 - Echvi_0392 0.82 +1.2
418,278 + Echvi_0392 0.85 -0.3
418,323 - Echvi_0392 0.90 +0.6
418,413 + +0.7
418,517 - Echvi_0393 0.43 -0.5
418,517 - Echvi_0393 0.43 -0.5
418,517 - Echvi_0393 0.43 +1.2
418,519 + Echvi_0393 0.44 -0.3
418,519 + Echvi_0393 0.44 -0.6
418,520 - Echvi_0393 0.44 -1.1
418,520 - Echvi_0393 0.44 -0.2
418,525 + Echvi_0393 0.47 -0.3
418,545 - Echvi_0393 0.59 -1.2
418,931 + +2.1
418,935 + -0.9
418,935 + -0.6
418,936 - +1.6
418,943 + +0.6
418,944 - -0.7
419,067 + +0.6
419,067 + +0.7
419,067 + +0.0
419,096 + Echvi_0395 0.11 -1.0
419,096 + Echvi_0395 0.11 -0.3
419,183 - Echvi_0395 0.29 -0.4
419,224 + Echvi_0395 0.38 -1.2
419,665 + +1.1
419,693 + -1.3
419,701 + +0.0
419,720 + -0.2
419,721 - +1.0
419,722 + -0.8
419,723 - +0.5
419,723 - +1.4
419,723 - +0.0
419,723 - +0.1
419,723 - +0.5
419,726 + -0.1
419,726 + -0.4
419,726 + -0.3
419,731 - +0.6
419,731 - -1.0
419,736 + +0.8
419,749 + +0.0
419,759 + +0.2
419,806 - +0.1
419,827 - -0.1
419,829 - +0.5
419,829 - -0.2
419,850 + +1.2
419,851 - +0.2
419,882 - +0.2
419,882 - -0.5
419,882 - -0.6
419,882 - -2.5
419,882 - -0.1
419,914 + +1.0
420,020 - Echvi_0396 0.14 -0.0
420,025 + Echvi_0396 0.14 +0.2
420,028 - Echvi_0396 0.15 -0.5
420,036 - Echvi_0396 0.15 +0.8
420,036 - Echvi_0396 0.15 +0.1
420,042 - Echvi_0396 0.16 -1.1
420,042 - Echvi_0396 0.16 +0.7
420,042 - Echvi_0396 0.16 -0.8
420,042 - Echvi_0396 0.16 -0.6
420,047 + Echvi_0396 0.16 +0.2
420,085 + Echvi_0396 0.20 +1.4
420,086 - Echvi_0396 0.20 +0.1
420,120 + Echvi_0396 0.23 +0.5
420,137 - Echvi_0396 0.25 +0.2
420,231 + Echvi_0396 0.34 +0.6
420,232 - Echvi_0396 0.34 +0.1
420,235 + Echvi_0396 0.34 +0.1
420,236 - Echvi_0396 0.34 +0.2
420,236 - Echvi_0396 0.34 +0.3
420,257 + Echvi_0396 0.36 +1.1
420,257 + Echvi_0396 0.36 -1.1
420,259 + Echvi_0396 0.37 -0.4
420,259 + Echvi_0396 0.37 +0.2
420,259 + Echvi_0396 0.37 +0.7
420,259 + Echvi_0396 0.37 -0.8
420,259 + Echvi_0396 0.37 -0.1
420,259 + Echvi_0396 0.37 -0.3
420,259 + Echvi_0396 0.37 -0.1
420,259 + Echvi_0396 0.37 +0.7
420,259 + Echvi_0396 0.37 -0.3
420,259 + Echvi_0396 0.37 +0.7
420,259 + Echvi_0396 0.37 -0.3
420,259 + Echvi_0396 0.37 -1.3
420,259 + Echvi_0396 0.37 +0.1
420,259 + Echvi_0396 0.37 +0.9
420,259 + Echvi_0396 0.37 -0.4
420,259 + Echvi_0396 0.37 +0.2
420,259 + Echvi_0396 0.37 -0.2
420,259 + Echvi_0396 0.37 -0.6
420,260 - Echvi_0396 0.37 +0.6
420,260 - Echvi_0396 0.37 +1.8
420,260 - Echvi_0396 0.37 -0.7
420,260 - Echvi_0396 0.37 -0.4
420,260 - Echvi_0396 0.37 -0.1
420,260 - Echvi_0396 0.37 +1.3
420,260 - Echvi_0396 0.37 -2.2
420,319 + Echvi_0396 0.42 +0.8
420,340 - Echvi_0396 0.44 -0.2
420,362 + Echvi_0396 0.46 +1.8
420,447 + Echvi_0396 0.55 +2.8
420,460 + Echvi_0396 0.56 -1.3
420,473 + Echvi_0396 0.57 +0.2
420,473 + Echvi_0396 0.57 +0.2
420,480 - Echvi_0396 0.58 -0.7
420,480 - Echvi_0396 0.58 +0.2
420,480 - Echvi_0396 0.58 -1.0
420,481 + Echvi_0396 0.58 +0.6
420,492 + Echvi_0396 0.59 -0.2
420,492 + Echvi_0396 0.59 -0.0
420,492 + Echvi_0396 0.59 +0.1
420,493 - Echvi_0396 0.59 -0.4
420,493 - Echvi_0396 0.59 +1.1
420,493 - Echvi_0396 0.59 -0.1
420,493 - Echvi_0396 0.59 -0.4
420,493 - Echvi_0396 0.59 -0.8
420,499 - Echvi_0396 0.60 +3.4

Or see this region's nucleotide sequence