Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0696

Experiment: m.b. Spectinomycin 0.06 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0695 and Echvi_0696 are separated by 153 nucleotidesEchvi_0696 and Echvi_0697 are separated by 15 nucleotides Echvi_0695: Echvi_0695 - UDP-glucose--hexose-1-phosphate uridylyltransferase (EC 2.7.7.12) (from data), at 785,209 to 786,252 _0695 Echvi_0696: Echvi_0696 - galactokinase, at 786,406 to 787,557 _0696 Echvi_0697: Echvi_0697 - Aldose 1-epimerase (EC 5.1.3.3) (from data), at 787,573 to 788,652 _0697 Position (kb) 786 787 788Strain fitness (log2 ratio) -2 -1 0 1 2at 785.526 kb on + strand, within Echvi_0695at 785.527 kb on - strand, within Echvi_0695at 785.536 kb on - strand, within Echvi_0695at 785.613 kb on + strand, within Echvi_0695at 785.613 kb on + strand, within Echvi_0695at 785.613 kb on + strand, within Echvi_0695at 785.614 kb on - strand, within Echvi_0695at 785.614 kb on - strand, within Echvi_0695at 785.614 kb on - strand, within Echvi_0695at 785.614 kb on - strand, within Echvi_0695at 785.639 kb on + strand, within Echvi_0695at 785.639 kb on + strand, within Echvi_0695at 785.645 kb on + strand, within Echvi_0695at 785.646 kb on - strand, within Echvi_0695at 785.646 kb on - strand, within Echvi_0695at 785.658 kb on + strand, within Echvi_0695at 785.659 kb on - strand, within Echvi_0695at 785.661 kb on + strand, within Echvi_0695at 785.661 kb on + strand, within Echvi_0695at 785.661 kb on + strand, within Echvi_0695at 785.661 kb on + strand, within Echvi_0695at 785.661 kb on + strand, within Echvi_0695at 785.661 kb on + strand, within Echvi_0695at 785.661 kb on + strand, within Echvi_0695at 785.661 kb on + strand, within Echvi_0695at 785.662 kb on - strand, within Echvi_0695at 785.662 kb on - strand, within Echvi_0695at 785.662 kb on - strand, within Echvi_0695at 785.662 kb on - strand, within Echvi_0695at 785.662 kb on - strand, within Echvi_0695at 785.681 kb on + strand, within Echvi_0695at 785.681 kb on + strand, within Echvi_0695at 785.682 kb on - strand, within Echvi_0695at 785.682 kb on - strand, within Echvi_0695at 785.682 kb on - strand, within Echvi_0695at 785.815 kb on - strand, within Echvi_0695at 785.854 kb on + strand, within Echvi_0695at 785.855 kb on - strand, within Echvi_0695at 785.855 kb on - strand, within Echvi_0695at 785.872 kb on - strand, within Echvi_0695at 785.882 kb on - strand, within Echvi_0695at 786.035 kb on + strand, within Echvi_0695at 786.035 kb on + strand, within Echvi_0695at 786.035 kb on + strand, within Echvi_0695at 786.035 kb on + strand, within Echvi_0695at 786.036 kb on - strand, within Echvi_0695at 786.036 kb on - strand, within Echvi_0695at 786.036 kb on - strand, within Echvi_0695at 786.036 kb on - strand, within Echvi_0695at 786.036 kb on - strand, within Echvi_0695at 786.210 kb on + strandat 786.210 kb on + strandat 786.212 kb on + strandat 786.213 kb on - strandat 786.219 kb on + strandat 786.219 kb on + strandat 786.219 kb on + strandat 786.219 kb on + strandat 786.220 kb on - strandat 786.220 kb on - strandat 786.220 kb on - strandat 786.220 kb on - strandat 786.225 kb on + strandat 786.226 kb on - strandat 786.260 kb on + strandat 786.276 kb on + strandat 786.276 kb on + strandat 786.277 kb on - strandat 786.306 kb on + strandat 786.376 kb on + strandat 786.376 kb on + strandat 786.398 kb on + strandat 786.416 kb on - strandat 786.643 kb on + strand, within Echvi_0696at 786.671 kb on + strand, within Echvi_0696at 786.671 kb on + strand, within Echvi_0696at 786.868 kb on + strand, within Echvi_0696at 786.869 kb on - strand, within Echvi_0696at 787.289 kb on + strand, within Echvi_0696at 787.543 kb on - strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.574 kb on + strandat 787.575 kb on - strandat 787.578 kb on + strandat 787.579 kb on - strandat 787.634 kb on - strandat 787.637 kb on - strandat 787.760 kb on + strand, within Echvi_0697at 787.760 kb on + strand, within Echvi_0697at 787.761 kb on - strand, within Echvi_0697at 787.882 kb on + strand, within Echvi_0697at 787.882 kb on + strand, within Echvi_0697at 787.883 kb on - strand, within Echvi_0697at 787.958 kb on - strand, within Echvi_0697at 787.983 kb on + strand, within Echvi_0697at 788.004 kb on + strand, within Echvi_0697at 788.005 kb on - strand, within Echvi_0697at 788.005 kb on - strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.070 kb on + strand, within Echvi_0697at 788.076 kb on - strand, within Echvi_0697at 788.160 kb on + strand, within Echvi_0697at 788.192 kb on + strand, within Echvi_0697at 788.311 kb on - strand, within Echvi_0697at 788.314 kb on + strand, within Echvi_0697at 788.314 kb on + strand, within Echvi_0697at 788.315 kb on - strand, within Echvi_0697at 788.328 kb on - strand, within Echvi_0697at 788.370 kb on + strand, within Echvi_0697at 788.430 kb on + strand, within Echvi_0697at 788.430 kb on + strand, within Echvi_0697at 788.431 kb on - strand, within Echvi_0697at 788.432 kb on + strand, within Echvi_0697at 788.432 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.519 kb on + strand, within Echvi_0697at 788.519 kb on + strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml
remove
785,526 + Echvi_0695 0.30 -0.1
785,527 - Echvi_0695 0.30 +0.4
785,536 - Echvi_0695 0.31 -1.2
785,613 + Echvi_0695 0.39 -0.8
785,613 + Echvi_0695 0.39 +0.0
785,613 + Echvi_0695 0.39 +0.8
785,614 - Echvi_0695 0.39 -0.5
785,614 - Echvi_0695 0.39 -0.4
785,614 - Echvi_0695 0.39 -1.3
785,614 - Echvi_0695 0.39 -1.0
785,639 + Echvi_0695 0.41 -0.2
785,639 + Echvi_0695 0.41 +0.3
785,645 + Echvi_0695 0.42 -0.3
785,646 - Echvi_0695 0.42 -0.7
785,646 - Echvi_0695 0.42 -1.2
785,658 + Echvi_0695 0.43 -0.4
785,659 - Echvi_0695 0.43 +0.5
785,661 + Echvi_0695 0.43 +1.4
785,661 + Echvi_0695 0.43 -0.1
785,661 + Echvi_0695 0.43 -1.8
785,661 + Echvi_0695 0.43 -0.3
785,661 + Echvi_0695 0.43 -0.2
785,661 + Echvi_0695 0.43 -0.5
785,661 + Echvi_0695 0.43 -0.0
785,661 + Echvi_0695 0.43 -0.5
785,662 - Echvi_0695 0.43 +0.1
785,662 - Echvi_0695 0.43 +0.2
785,662 - Echvi_0695 0.43 +0.3
785,662 - Echvi_0695 0.43 -0.1
785,662 - Echvi_0695 0.43 +1.2
785,681 + Echvi_0695 0.45 +1.9
785,681 + Echvi_0695 0.45 +0.4
785,682 - Echvi_0695 0.45 -2.7
785,682 - Echvi_0695 0.45 +0.1
785,682 - Echvi_0695 0.45 +0.6
785,815 - Echvi_0695 0.58 -0.5
785,854 + Echvi_0695 0.62 -0.4
785,855 - Echvi_0695 0.62 +0.2
785,855 - Echvi_0695 0.62 -2.2
785,872 - Echvi_0695 0.64 -1.6
785,882 - Echvi_0695 0.64 +1.4
786,035 + Echvi_0695 0.79 -0.0
786,035 + Echvi_0695 0.79 +1.6
786,035 + Echvi_0695 0.79 +0.2
786,035 + Echvi_0695 0.79 +0.2
786,036 - Echvi_0695 0.79 -1.9
786,036 - Echvi_0695 0.79 +0.8
786,036 - Echvi_0695 0.79 -0.5
786,036 - Echvi_0695 0.79 +0.8
786,036 - Echvi_0695 0.79 +1.0
786,210 + -0.0
786,210 + -0.7
786,212 + +1.8
786,213 - +0.1
786,219 + +0.3
786,219 + +0.5
786,219 + -0.6
786,219 + +1.1
786,220 - -0.4
786,220 - +0.2
786,220 - +0.5
786,220 - +0.4
786,225 + -0.4
786,226 - +1.2
786,260 + +0.3
786,276 + +0.2
786,276 + +0.3
786,277 - +0.8
786,306 + -0.5
786,376 + +0.5
786,376 + +0.0
786,398 + -0.9
786,416 - +0.1
786,643 + Echvi_0696 0.21 -1.9
786,671 + Echvi_0696 0.23 -1.5
786,671 + Echvi_0696 0.23 -0.5
786,868 + Echvi_0696 0.40 -2.4
786,869 - Echvi_0696 0.40 +1.4
787,289 + Echvi_0696 0.77 -2.3
787,543 - -0.4
787,566 - -0.5
787,566 - -0.3
787,566 - +0.0
787,566 - +0.7
787,574 + +0.8
787,575 - -1.1
787,578 + +2.1
787,579 - -1.2
787,634 - +2.2
787,637 - -0.1
787,760 + Echvi_0697 0.17 -1.4
787,760 + Echvi_0697 0.17 +0.0
787,761 - Echvi_0697 0.17 -0.2
787,882 + Echvi_0697 0.29 -0.7
787,882 + Echvi_0697 0.29 +0.3
787,883 - Echvi_0697 0.29 +1.0
787,958 - Echvi_0697 0.36 +0.4
787,983 + Echvi_0697 0.38 -1.5
788,004 + Echvi_0697 0.40 -2.6
788,005 - Echvi_0697 0.40 +1.8
788,005 - Echvi_0697 0.40 +1.3
788,006 + Echvi_0697 0.40 +0.0
788,006 + Echvi_0697 0.40 -1.6
788,006 + Echvi_0697 0.40 +1.1
788,006 + Echvi_0697 0.40 -0.2
788,007 - Echvi_0697 0.40 -1.2
788,007 - Echvi_0697 0.40 -0.7
788,007 - Echvi_0697 0.40 +1.1
788,070 + Echvi_0697 0.46 -2.6
788,076 - Echvi_0697 0.47 +0.4
788,160 + Echvi_0697 0.54 +0.0
788,192 + Echvi_0697 0.57 +0.7
788,311 - Echvi_0697 0.68 +0.8
788,314 + Echvi_0697 0.69 -0.0
788,314 + Echvi_0697 0.69 +0.0
788,315 - Echvi_0697 0.69 -0.9
788,328 - Echvi_0697 0.70 -0.5
788,370 + Echvi_0697 0.74 -0.1
788,430 + Echvi_0697 0.79 +1.4
788,430 + Echvi_0697 0.79 +1.4
788,431 - Echvi_0697 0.79 -1.4
788,432 + Echvi_0697 0.80 +0.1
788,432 + Echvi_0697 0.80 -0.8
788,441 + Echvi_0697 0.80 -0.8
788,441 + Echvi_0697 0.80 +0.2
788,441 + Echvi_0697 0.80 +1.8
788,441 + Echvi_0697 0.80 +0.1
788,441 + Echvi_0697 0.80 -0.0
788,441 + Echvi_0697 0.80 +0.8
788,441 + Echvi_0697 0.80 -1.2
788,442 - Echvi_0697 0.80 -0.2
788,442 - Echvi_0697 0.80 -0.1
788,442 - Echvi_0697 0.80 -0.9
788,442 - Echvi_0697 0.80 -0.5
788,442 - Echvi_0697 0.80 +0.4
788,519 + Echvi_0697 0.88 +0.6
788,519 + Echvi_0697 0.88 +0.5
788,520 - Echvi_0697 0.88 -0.3
788,520 - Echvi_0697 0.88 -0.8
788,520 - Echvi_0697 0.88 -0.8

Or see this region's nucleotide sequence