Strain Fitness in Escherichia coli BW25113 around b3462
Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 2 mM |
---|---|---|---|---|---|
remove | |||||
3,598,735 | - | +0.8 | |||
3,598,802 | + | +1.0 | |||
3,598,802 | + | +0.5 | |||
3,599,058 | + | +0.3 | |||
3,599,058 | + | -0.7 | |||
3,599,066 | - | +0.1 | |||
3,599,093 | - | -0.1 | |||
3,599,093 | - | -0.0 | |||
3,599,283 | - | ftsX | b3462 | 0.22 | -1.6 |
3,599,294 | - | ftsX | b3462 | 0.23 | -0.8 |
3,599,655 | + | ftsX | b3462 | 0.57 | -0.4 |
3,599,655 | + | ftsX | b3462 | 0.57 | -0.6 |
3,599,720 | - | ftsX | b3462 | 0.63 | +0.8 |
3,599,722 | - | ftsX | b3462 | 0.63 | -0.6 |
3,599,795 | + | ftsX | b3462 | 0.70 | -0.4 |
3,599,832 | + | ftsX | b3462 | 0.74 | -0.6 |
3,599,840 | - | ftsX | b3462 | 0.75 | -0.8 |
3,599,945 | - | ftsX | b3462 | 0.84 | -0.5 |
3,599,945 | - | ftsX | b3462 | 0.84 | +0.7 |
3,599,972 | - | ftsX | b3462 | 0.87 | -0.0 |
3,600,020 | + | -2.1 | |||
3,600,042 | + | +0.7 | |||
3,600,042 | + | +0.4 | |||
3,600,106 | - | +0.0 | |||
3,600,117 | + | -3.1 | |||
3,600,126 | - | +0.3 | |||
3,600,126 | - | +0.7 | |||
3,600,145 | - | -0.6 | |||
3,600,147 | - | +0.2 | |||
3,600,147 | - | -2.0 | |||
3,600,157 | - | +0.6 | |||
3,600,184 | - | ftsE | b3463 | 0.12 | -1.8 |
3,600,286 | + | ftsE | b3463 | 0.28 | -0.1 |
3,600,304 | + | ftsE | b3463 | 0.30 | -1.1 |
3,600,309 | + | ftsE | b3463 | 0.31 | -1.6 |
3,600,362 | + | ftsE | b3463 | 0.39 | -1.6 |
3,600,412 | + | ftsE | b3463 | 0.46 | -1.8 |
3,600,451 | + | ftsE | b3463 | 0.52 | -0.6 |
3,600,485 | - | ftsE | b3463 | 0.57 | +0.2 |
3,600,490 | - | ftsE | b3463 | 0.58 | +1.5 |
3,600,604 | + | ftsE | b3463 | 0.75 | -1.1 |
3,600,612 | - | ftsE | b3463 | 0.76 | -0.4 |
3,600,692 | + | ftsE | b3463 | 0.88 | -0.4 |
3,600,692 | + | ftsE | b3463 | 0.88 | -1.4 |
3,600,719 | - | -1.5 |
Or see this region's nucleotide sequence