Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3710

Experiment: m.b. Tetracycline 0.12 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Tetracycline 0.12 mg/ml
4,415,716	-		Echvi_3708	0.88	-1.6
4,415,762	-				-2.3
4,415,788	+				-0.2
4,415,788	+				-0.0
4,415,789	-				-0.4
4,415,789	-				-0.8
4,415,936	+		Echvi_3709	0.19	-2.9
4,415,937	-		Echvi_3709	0.19	+0.9
4,415,942	+		Echvi_3709	0.19	-2.3
4,415,953	+		Echvi_3709	0.21	+0.5
4,415,953	+		Echvi_3709	0.21	-1.5
4,415,954	-		Echvi_3709	0.21	-1.0
4,415,967	+		Echvi_3709	0.22	-1.5
4,416,078	+		Echvi_3709	0.34	-0.9
4,416,079	-		Echvi_3709	0.34	-0.2
4,416,086	+		Echvi_3709	0.35	-1.0
4,416,170	-		Echvi_3709	0.44	-1.1
4,416,170	-		Echvi_3709	0.44	+0.3
4,416,171	+		Echvi_3709	0.44	-2.0
4,416,242	+		Echvi_3709	0.52	-0.4
4,416,315	+		Echvi_3709	0.60	+1.3
4,416,315	+		Echvi_3709	0.60	-1.3
4,416,315	+		Echvi_3709	0.60	-1.2
4,416,315	+		Echvi_3709	0.60	-0.7
4,416,317	+		Echvi_3709	0.60	-0.0
4,416,338	-		Echvi_3709	0.63	-2.0
4,416,505	-		Echvi_3709	0.81	-0.3
4,416,576	+		Echvi_3709	0.89	-1.4
4,416,589	-				-0.6
4,416,666	+				-2.0
4,416,667	-				-0.7
4,416,852	+		Echvi_3710	0.21	+0.5
4,416,853	-		Echvi_3710	0.21	+0.7
4,416,853	-		Echvi_3710	0.21	-1.0
4,416,909	-		Echvi_3710	0.28	+2.0
4,416,920	+		Echvi_3710	0.30	+0.8
4,416,920	+		Echvi_3710	0.30	+0.3
4,416,921	-		Echvi_3710	0.30	-1.0
4,416,921	-		Echvi_3710	0.30	+0.2
4,416,922	+		Echvi_3710	0.30	-0.1
4,416,922	+		Echvi_3710	0.30	-0.7
4,416,930	+		Echvi_3710	0.31	-1.0
4,416,931	-		Echvi_3710	0.31	+0.5
4,416,987	+		Echvi_3710	0.38	-0.6
4,417,293	+		Echvi_3710	0.76	-0.9
4,417,294	-		Echvi_3710	0.77	+0.2
4,417,294	-		Echvi_3710	0.77	-0.2
4,417,347	+		Echvi_3710	0.83	+0.7
4,417,347	+		Echvi_3710	0.83	+0.8
4,417,347	+		Echvi_3710	0.83	+1.5
4,417,348	-		Echvi_3710	0.83	-0.5
4,417,348	-		Echvi_3710	0.83	-0.0
4,417,348	-		Echvi_3710	0.83	+1.3
4,417,353	+		Echvi_3710	0.84	+0.2
4,417,356	-		Echvi_3710	0.84	+0.1
4,417,378	+		Echvi_3710	0.87	-0.3
4,417,419	+				+0.1
4,417,599	+				+0.6
4,417,646	+				+2.5
4,417,646	+		Echvi_3711	0.11	-1.0
4,417,696	+		Echvi_3711	0.28	-1.3
4,417,736	-		Echvi_3711	0.41	+0.7
4,417,777	-		Echvi_3711	0.55	-0.2
4,417,817	-				-0.5
4,417,820	-				-0.2
4,417,820	-				+0.6
4,417,826	-				+0.6
4,417,826	-				+1.1
4,417,953	+		Echvi_3712	0.55	+0.4
4,418,009	+		Echvi_3712	0.75	+1.0
4,418,010	-		Echvi_3712	0.75	-0.5
4,418,010	-		Echvi_3712	0.75	-0.7
4,418,027	+		Echvi_3712	0.82	-0.3
4,418,031	-		Echvi_3712	0.83	-0.1
4,418,077	+				+0.5
4,418,077	+				+2.9
4,418,078	-				+1.5
4,418,078	-				-0.0
4,418,078	-				+0.5
4,418,130	+				-1.0
4,418,130	+				+0.7
4,418,131	-				+0.2
4,418,132	+				+1.3
4,418,133	-				-0.6
4,418,133	-				+0.4
4,418,155	+				-0.1
4,418,181	+				+2.7
4,418,182	-				+0.6
4,418,191	-				+0.3
4,418,204	-				-0.2
4,418,209	+				-0.1
4,418,209	+				-1.8
4,418,209	+				+1.4
4,418,209	+				-1.3
4,418,210	-				+0.0
4,418,210	-				-0.4
4,418,210	-				+0.3
4,418,211	+				+0.2
4,418,212	-				-0.2
4,418,216	-				+0.5
4,418,239	+				-0.9
4,418,240	-				-0.8
4,418,253	+				+1.5
4,418,253	+				-1.8
4,418,256	+				+3.1
4,418,256	+				-0.8
4,418,257	-				-1.6
4,418,257	-				-0.4
4,418,257	-				+0.3
4,418,288	+				-0.8
4,418,288	+				-3.1
4,418,288	+				+0.3
4,418,290	+				+1.0
4,418,320	+		Echvi_3713	0.13	-0.1
4,418,321	-		Echvi_3713	0.13	-0.0
4,418,342	+		Echvi_3713	0.16	+0.8
4,418,370	+		Echvi_3713	0.20	-0.1
4,418,376	+		Echvi_3713	0.21	+1.0
4,418,463	+		Echvi_3713	0.33	-0.4