Experiment: m.b. Tetracycline 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0372 and Echvi_0373 are separated by 3 nucleotides Echvi_0373 and Echvi_0374 are separated by 12 nucleotides Echvi_0374 and Echvi_0375 are separated by 209 nucleotides Echvi_0375 and Echvi_0376 are separated by 300 nucleotides
Echvi_0372: Echvi_0372 - conserved hypothetical protein, YceG family, at 400,296 to 401,339
_0372
Echvi_0373: Echvi_0373 - acyl-CoA thioester hydrolase, YbgC/YbaW family, at 401,343 to 401,747
_0373
Echvi_0374: Echvi_0374 - Predicted membrane protein, at 401,760 to 402,704
_0374
Echvi_0375: Echvi_0375 - tRNA, at 402,914 to 402,998
_0375
Echvi_0376: Echvi_0376 - hypothetical protein, at 403,299 to 403,862
_0376
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.819 kb on - strand, within Echvi_0372 at 400.829 kb on + strand, within Echvi_0372 at 400.857 kb on + strand at 401.004 kb on + strand, within Echvi_0372 at 401.025 kb on - strand, within Echvi_0372 at 401.121 kb on + strand, within Echvi_0372 at 401.159 kb on + strand, within Echvi_0372 at 401.163 kb on - strand, within Echvi_0372 at 401.163 kb on - strand, within Echvi_0372 at 401.217 kb on + strand, within Echvi_0372 at 401.218 kb on - strand, within Echvi_0372 at 401.218 kb on - strand, within Echvi_0372 at 401.221 kb on + strand, within Echvi_0372 at 401.223 kb on + strand, within Echvi_0372 at 401.223 kb on + strand, within Echvi_0372 at 401.223 kb on + strand, within Echvi_0372 at 401.223 kb on + strand, within Echvi_0372 at 401.223 kb on + strand, within Echvi_0372 at 401.223 kb on + strand, within Echvi_0372 at 401.224 kb on - strand, within Echvi_0372 at 401.305 kb on - strand at 401.334 kb on + strand at 401.337 kb on + strand at 401.342 kb on + strand at 401.342 kb on + strand at 401.343 kb on - strand at 401.343 kb on - strand at 401.349 kb on - strand at 401.349 kb on - strand at 401.365 kb on + strand at 401.365 kb on + strand at 401.366 kb on - strand at 401.372 kb on - strand at 401.400 kb on + strand, within Echvi_0373 at 401.400 kb on + strand, within Echvi_0373 at 401.400 kb on + strand, within Echvi_0373 at 401.401 kb on - strand, within Echvi_0373 at 401.406 kb on + strand, within Echvi_0373 at 401.406 kb on + strand, within Echvi_0373 at 401.406 kb on + strand, within Echvi_0373 at 401.407 kb on - strand, within Echvi_0373 at 401.409 kb on + strand, within Echvi_0373 at 401.410 kb on - strand, within Echvi_0373 at 401.410 kb on - strand, within Echvi_0373 at 401.418 kb on + strand, within Echvi_0373 at 401.418 kb on + strand, within Echvi_0373 at 401.419 kb on - strand, within Echvi_0373 at 401.427 kb on + strand, within Echvi_0373 at 401.427 kb on + strand, within Echvi_0373 at 401.428 kb on - strand, within Echvi_0373 at 401.512 kb on + strand, within Echvi_0373 at 401.512 kb on + strand, within Echvi_0373 at 401.512 kb on + strand, within Echvi_0373 at 401.515 kb on + strand, within Echvi_0373 at 401.516 kb on - strand, within Echvi_0373 at 401.516 kb on - strand, within Echvi_0373 at 401.532 kb on + strand, within Echvi_0373 at 401.560 kb on + strand, within Echvi_0373 at 401.560 kb on + strand, within Echvi_0373 at 401.560 kb on + strand, within Echvi_0373 at 401.561 kb on - strand, within Echvi_0373 at 401.561 kb on - strand, within Echvi_0373 at 401.722 kb on + strand at 401.740 kb on - strand at 401.740 kb on - strand at 401.785 kb on + strand at 401.806 kb on - strand at 401.857 kb on - strand, within Echvi_0374 at 401.930 kb on + strand, within Echvi_0374 at 401.988 kb on - strand, within Echvi_0374 at 402.038 kb on - strand, within Echvi_0374 at 402.145 kb on + strand, within Echvi_0374 at 402.146 kb on - strand, within Echvi_0374 at 402.146 kb on - strand, within Echvi_0374 at 402.147 kb on + strand, within Echvi_0374 at 402.147 kb on + strand, within Echvi_0374 at 402.148 kb on - strand, within Echvi_0374 at 402.180 kb on - strand, within Echvi_0374 at 402.199 kb on - strand, within Echvi_0374 at 402.289 kb on + strand, within Echvi_0374 at 402.290 kb on - strand, within Echvi_0374 at 402.336 kb on + strand, within Echvi_0374 at 402.336 kb on + strand, within Echvi_0374 at 402.361 kb on - strand, within Echvi_0374 at 402.361 kb on - strand, within Echvi_0374 at 402.361 kb on - strand, within Echvi_0374 at 402.361 kb on - strand, within Echvi_0374 at 402.363 kb on - strand, within Echvi_0374 at 402.369 kb on + strand, within Echvi_0374 at 402.401 kb on - strand, within Echvi_0374 at 402.435 kb on - strand, within Echvi_0374 at 402.435 kb on - strand, within Echvi_0374 at 402.526 kb on - strand, within Echvi_0374 at 402.526 kb on - strand, within Echvi_0374 at 402.587 kb on + strand, within Echvi_0374 at 402.587 kb on + strand, within Echvi_0374 at 402.658 kb on + strand at 402.658 kb on + strand at 402.658 kb on + strand at 402.847 kb on + strand at 403.129 kb on - strand at 403.131 kb on + strand at 403.132 kb on - strand at 403.148 kb on - strand at 403.184 kb on + strand at 403.243 kb on + strand at 403.243 kb on + strand at 403.276 kb on + strand at 403.277 kb on - strand at 403.350 kb on - strand at 403.350 kb on - strand at 403.350 kb on - strand at 403.379 kb on + strand, within Echvi_0376 at 403.380 kb on - strand, within Echvi_0376 at 403.380 kb on - strand, within Echvi_0376 at 403.391 kb on - strand, within Echvi_0376 at 403.391 kb on - strand, within Echvi_0376 at 403.403 kb on + strand, within Echvi_0376 at 403.405 kb on + strand, within Echvi_0376 at 403.405 kb on + strand, within Echvi_0376 at 403.405 kb on + strand, within Echvi_0376 at 403.406 kb on - strand, within Echvi_0376 at 403.406 kb on - strand, within Echvi_0376 at 403.406 kb on - strand, within Echvi_0376 at 403.409 kb on + strand, within Echvi_0376 at 403.412 kb on + strand, within Echvi_0376 at 403.412 kb on + strand, within Echvi_0376 at 403.413 kb on - strand, within Echvi_0376 at 403.448 kb on + strand, within Echvi_0376 at 403.448 kb on + strand, within Echvi_0376 at 403.449 kb on - strand, within Echvi_0376 at 403.491 kb on + strand, within Echvi_0376 at 403.492 kb on - strand, within Echvi_0376 at 403.521 kb on - strand, within Echvi_0376 at 403.526 kb on - strand, within Echvi_0376 at 403.526 kb on - strand, within Echvi_0376 at 403.526 kb on - strand, within Echvi_0376 at 403.526 kb on - strand, within Echvi_0376 at 403.534 kb on - strand, within Echvi_0376 at 403.553 kb on - strand, within Echvi_0376 at 403.591 kb on + strand, within Echvi_0376 at 403.653 kb on + strand, within Echvi_0376 at 403.666 kb on + strand, within Echvi_0376 at 403.671 kb on - strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.675 kb on - strand at 403.676 kb on + strand, within Echvi_0376 at 403.676 kb on + strand, within Echvi_0376 at 403.679 kb on + strand, within Echvi_0376
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.12 mg/ml remove 400,819 - Echvi_0372 0.50 +1.2 400,829 + Echvi_0372 0.51 -1.2 400,857 + -0.4 401,004 + Echvi_0372 0.68 +2.2 401,025 - Echvi_0372 0.70 +0.4 401,121 + Echvi_0372 0.79 +0.9 401,159 + Echvi_0372 0.83 +0.5 401,163 - Echvi_0372 0.83 +1.1 401,163 - Echvi_0372 0.83 -0.1 401,217 + Echvi_0372 0.88 +0.4 401,218 - Echvi_0372 0.88 +1.5 401,218 - Echvi_0372 0.88 +2.6 401,221 + Echvi_0372 0.89 +1.5 401,223 + Echvi_0372 0.89 +0.9 401,223 + Echvi_0372 0.89 -0.4 401,223 + Echvi_0372 0.89 +2.4 401,223 + Echvi_0372 0.89 +1.0 401,223 + Echvi_0372 0.89 +0.3 401,223 + Echvi_0372 0.89 +0.8 401,224 - Echvi_0372 0.89 -0.8 401,305 - -0.3 401,334 + +2.6 401,337 + -0.9 401,342 + +0.1 401,342 + +0.6 401,343 - +1.6 401,343 - +0.2 401,349 - +0.2 401,349 - -0.9 401,365 + -0.8 401,365 + +0.9 401,366 - +0.3 401,372 - +0.6 401,400 + Echvi_0373 0.14 +0.3 401,400 + Echvi_0373 0.14 +0.4 401,400 + Echvi_0373 0.14 +1.0 401,401 - Echvi_0373 0.14 -0.1 401,406 + Echvi_0373 0.16 +0.0 401,406 + Echvi_0373 0.16 +0.6 401,406 + Echvi_0373 0.16 +0.2 401,407 - Echvi_0373 0.16 -1.5 401,409 + Echvi_0373 0.16 +0.4 401,410 - Echvi_0373 0.17 +0.1 401,410 - Echvi_0373 0.17 +0.6 401,418 + Echvi_0373 0.19 +0.1 401,418 + Echvi_0373 0.19 -0.1 401,419 - Echvi_0373 0.19 -0.5 401,427 + Echvi_0373 0.21 +0.3 401,427 + Echvi_0373 0.21 -2.1 401,428 - Echvi_0373 0.21 -0.1 401,512 + Echvi_0373 0.42 +2.3 401,512 + Echvi_0373 0.42 -1.1 401,512 + Echvi_0373 0.42 +0.6 401,515 + Echvi_0373 0.42 +0.5 401,516 - Echvi_0373 0.43 -0.1 401,516 - Echvi_0373 0.43 -0.7 401,532 + Echvi_0373 0.47 +0.9 401,560 + Echvi_0373 0.54 +1.0 401,560 + Echvi_0373 0.54 -0.1 401,560 + Echvi_0373 0.54 +0.1 401,561 - Echvi_0373 0.54 +0.8 401,561 - Echvi_0373 0.54 -0.5 401,722 + +0.1 401,740 - +0.5 401,740 - -0.9 401,785 + -0.2 401,806 - -0.4 401,857 - Echvi_0374 0.10 +0.5 401,930 + Echvi_0374 0.18 -2.7 401,988 - Echvi_0374 0.24 -1.0 402,038 - Echvi_0374 0.29 -0.3 402,145 + Echvi_0374 0.41 -0.4 402,146 - Echvi_0374 0.41 +0.5 402,146 - Echvi_0374 0.41 +0.1 402,147 + Echvi_0374 0.41 -0.4 402,147 + Echvi_0374 0.41 -1.3 402,148 - Echvi_0374 0.41 +1.6 402,180 - Echvi_0374 0.44 +0.1 402,199 - Echvi_0374 0.46 -0.2 402,289 + Echvi_0374 0.56 -0.1 402,290 - Echvi_0374 0.56 -0.9 402,336 + Echvi_0374 0.61 -0.4 402,336 + Echvi_0374 0.61 -0.5 402,361 - Echvi_0374 0.64 -0.2 402,361 - Echvi_0374 0.64 -0.5 402,361 - Echvi_0374 0.64 -0.8 402,361 - Echvi_0374 0.64 -0.9 402,363 - Echvi_0374 0.64 +0.2 402,369 + Echvi_0374 0.64 +0.0 402,401 - Echvi_0374 0.68 -0.8 402,435 - Echvi_0374 0.71 -1.4 402,435 - Echvi_0374 0.71 -1.1 402,526 - Echvi_0374 0.81 -1.0 402,526 - Echvi_0374 0.81 -0.8 402,587 + Echvi_0374 0.88 -0.4 402,587 + Echvi_0374 0.88 -0.7 402,658 + -0.2 402,658 + -0.2 402,658 + -1.0 402,847 + -0.1 403,129 - -0.5 403,131 + -0.3 403,132 - -0.4 403,148 - -0.5 403,184 + -0.7 403,243 + -0.9 403,243 + +1.4 403,276 + +0.9 403,277 - -0.5 403,350 - +0.4 403,350 - +0.7 403,350 - +0.2 403,379 + Echvi_0376 0.14 -0.7 403,380 - Echvi_0376 0.14 +0.5 403,380 - Echvi_0376 0.14 +1.6 403,391 - Echvi_0376 0.16 -2.5 403,391 - Echvi_0376 0.16 -0.9 403,403 + Echvi_0376 0.18 +0.8 403,405 + Echvi_0376 0.19 -0.7 403,405 + Echvi_0376 0.19 +0.3 403,405 + Echvi_0376 0.19 +1.1 403,406 - Echvi_0376 0.19 -0.2 403,406 - Echvi_0376 0.19 +0.6 403,406 - Echvi_0376 0.19 -0.9 403,409 + Echvi_0376 0.20 -0.8 403,412 + Echvi_0376 0.20 +1.2 403,412 + Echvi_0376 0.20 +0.3 403,413 - Echvi_0376 0.20 -0.6 403,448 + Echvi_0376 0.26 -0.9 403,448 + Echvi_0376 0.26 -1.0 403,449 - Echvi_0376 0.27 -2.4 403,491 + Echvi_0376 0.34 +1.2 403,492 - Echvi_0376 0.34 +1.1 403,521 - Echvi_0376 0.39 +1.6 403,526 - Echvi_0376 0.40 -0.1 403,526 - Echvi_0376 0.40 +1.6 403,526 - Echvi_0376 0.40 -0.2 403,526 - Echvi_0376 0.40 +0.9 403,534 - Echvi_0376 0.42 -0.6 403,553 - Echvi_0376 0.45 +1.1 403,591 + Echvi_0376 0.52 -0.7 403,653 + Echvi_0376 0.63 -0.3 403,666 + Echvi_0376 0.65 -0.7 403,671 - Echvi_0376 0.66 +0.8 403,674 + Echvi_0376 0.66 +0.5 403,674 + Echvi_0376 0.66 -1.7 403,674 + Echvi_0376 0.66 -0.2 403,674 + Echvi_0376 0.66 +0.5 403,674 + Echvi_0376 0.66 -0.6 403,675 - +0.6 403,676 + Echvi_0376 0.67 -0.2 403,676 + Echvi_0376 0.67 -0.7 403,679 + Echvi_0376 0.67 -0.2
Or see this region's nucleotide sequence