Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0363

Experiment: m.b. Tetracycline 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0361 and Echvi_0362 are separated by 297 nucleotidesEchvi_0362 and Echvi_0363 are separated by 10 nucleotidesEchvi_0363 and Echvi_0364 are separated by 253 nucleotides Echvi_0361: Echvi_0361 - hypothetical protein, at 388,436 to 389,359 _0361 Echvi_0362: Echvi_0362 - hypothetical protein, at 389,657 to 390,136 _0362 Echvi_0363: Echvi_0363 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 390,147 to 391,259 _0363 Echvi_0364: Echvi_0364 - hypothetical protein, at 391,513 to 392,265 _0364 Position (kb) 390 391 392Strain fitness (log2 ratio) -2 -1 0 1 2at 389.170 kb on + strand, within Echvi_0361at 389.222 kb on + strand, within Echvi_0361at 389.223 kb on - strand, within Echvi_0361at 389.223 kb on - strand, within Echvi_0361at 389.224 kb on + strand, within Echvi_0361at 389.224 kb on + strand, within Echvi_0361at 389.224 kb on + strand, within Echvi_0361at 389.224 kb on + strand, within Echvi_0361at 389.225 kb on - strand, within Echvi_0361at 389.225 kb on - strand, within Echvi_0361at 389.312 kb on + strandat 389.314 kb on + strandat 389.314 kb on + strandat 389.315 kb on - strandat 389.315 kb on - strandat 389.315 kb on - strandat 389.315 kb on - strandat 389.358 kb on - strandat 389.388 kb on - strandat 389.418 kb on + strandat 389.465 kb on - strandat 389.564 kb on + strandat 389.575 kb on - strandat 389.685 kb on - strandat 389.695 kb on + strandat 389.695 kb on + strandat 389.708 kb on - strand, within Echvi_0362at 389.717 kb on + strand, within Echvi_0362at 389.828 kb on + strand, within Echvi_0362at 389.942 kb on - strand, within Echvi_0362at 389.952 kb on + strand, within Echvi_0362at 389.952 kb on + strand, within Echvi_0362at 389.953 kb on - strand, within Echvi_0362at 389.966 kb on + strand, within Echvi_0362at 390.046 kb on + strand, within Echvi_0362at 390.107 kb on - strandat 390.155 kb on + strandat 390.179 kb on + strandat 390.179 kb on + strandat 390.184 kb on + strandat 390.206 kb on - strandat 390.206 kb on - strandat 390.313 kb on + strand, within Echvi_0363at 390.482 kb on + strand, within Echvi_0363at 390.482 kb on + strand, within Echvi_0363at 390.484 kb on + strand, within Echvi_0363at 390.485 kb on - strand, within Echvi_0363at 390.485 kb on - strand, within Echvi_0363at 390.541 kb on - strand, within Echvi_0363at 390.577 kb on + strand, within Echvi_0363at 390.580 kb on + strand, within Echvi_0363at 390.580 kb on + strand, within Echvi_0363at 390.581 kb on - strand, within Echvi_0363at 390.781 kb on + strand, within Echvi_0363at 390.781 kb on + strand, within Echvi_0363at 390.827 kb on + strand, within Echvi_0363at 391.034 kb on - strand, within Echvi_0363at 391.043 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.115 kb on + strand, within Echvi_0363at 391.118 kb on - strand, within Echvi_0363at 391.127 kb on - strand, within Echvi_0363at 391.147 kb on + strand, within Echvi_0363at 391.147 kb on + strand, within Echvi_0363at 391.205 kb on - strandat 391.232 kb on + strandat 391.233 kb on - strandat 391.357 kb on - strandat 391.362 kb on - strandat 391.401 kb on - strandat 391.450 kb on + strandat 391.450 kb on + strandat 391.450 kb on + strandat 391.494 kb on - strandat 391.498 kb on + strandat 391.513 kb on - strandat 391.517 kb on + strandat 391.566 kb on - strandat 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.658 kb on + strand, within Echvi_0364at 391.666 kb on + strand, within Echvi_0364at 391.703 kb on - strand, within Echvi_0364at 391.730 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.739 kb on - strand, within Echvi_0364at 391.751 kb on - strand, within Echvi_0364at 391.751 kb on - strand, within Echvi_0364at 391.760 kb on - strand, within Echvi_0364at 391.780 kb on + strand, within Echvi_0364at 391.917 kb on - strand, within Echvi_0364at 391.917 kb on - strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.112 kb on + strand, within Echvi_0364at 392.166 kb on - strand, within Echvi_0364at 392.168 kb on - strand, within Echvi_0364at 392.168 kb on - strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.170 kb on - strand, within Echvi_0364at 392.180 kb on + strand, within Echvi_0364at 392.189 kb on - strand, within Echvi_0364

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.12 mg/ml
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389,170 + Echvi_0361 0.79 -0.4
389,222 + Echvi_0361 0.85 -0.1
389,223 - Echvi_0361 0.85 +0.3
389,223 - Echvi_0361 0.85 +0.7
389,224 + Echvi_0361 0.85 +0.1
389,224 + Echvi_0361 0.85 +0.7
389,224 + Echvi_0361 0.85 +0.3
389,224 + Echvi_0361 0.85 -0.8
389,225 - Echvi_0361 0.85 -0.1
389,225 - Echvi_0361 0.85 -0.3
389,312 + +1.1
389,314 + +0.5
389,314 + +0.3
389,315 - -0.2
389,315 - -1.4
389,315 - -0.7
389,315 - -1.1
389,358 - -0.3
389,388 - +0.1
389,418 + +1.5
389,465 - -0.0
389,564 + +1.1
389,575 - -0.9
389,685 - +0.7
389,695 + -1.5
389,695 + -0.6
389,708 - Echvi_0362 0.11 -0.2
389,717 + Echvi_0362 0.12 +0.3
389,828 + Echvi_0362 0.36 -1.2
389,942 - Echvi_0362 0.59 -1.1
389,952 + Echvi_0362 0.61 -0.4
389,952 + Echvi_0362 0.61 +0.1
389,953 - Echvi_0362 0.62 +1.2
389,966 + Echvi_0362 0.64 -0.8
390,046 + Echvi_0362 0.81 -0.4
390,107 - +0.3
390,155 + -0.9
390,179 + +0.6
390,179 + -1.5
390,184 + -0.9
390,206 - +0.3
390,206 - +0.1
390,313 + Echvi_0363 0.15 -1.4
390,482 + Echvi_0363 0.30 +1.1
390,482 + Echvi_0363 0.30 -1.0
390,484 + Echvi_0363 0.30 -2.7
390,485 - Echvi_0363 0.30 -1.1
390,485 - Echvi_0363 0.30 -0.5
390,541 - Echvi_0363 0.35 -1.9
390,577 + Echvi_0363 0.39 -1.9
390,580 + Echvi_0363 0.39 -1.2
390,580 + Echvi_0363 0.39 -1.1
390,581 - Echvi_0363 0.39 -1.6
390,781 + Echvi_0363 0.57 -0.6
390,781 + Echvi_0363 0.57 +0.1
390,827 + Echvi_0363 0.61 -1.7
391,034 - Echvi_0363 0.80 -1.2
391,043 + Echvi_0363 0.81 -1.2
391,047 + Echvi_0363 0.81 -0.2
391,047 + Echvi_0363 0.81 -0.9
391,047 + Echvi_0363 0.81 -1.6
391,047 + Echvi_0363 0.81 -1.4
391,047 + Echvi_0363 0.81 -1.2
391,047 + Echvi_0363 0.81 -2.0
391,047 + Echvi_0363 0.81 +0.1
391,047 + Echvi_0363 0.81 -1.8
391,048 - Echvi_0363 0.81 +1.6
391,048 - Echvi_0363 0.81 -0.8
391,048 - Echvi_0363 0.81 +0.1
391,115 + Echvi_0363 0.87 -1.2
391,118 - Echvi_0363 0.87 -1.2
391,127 - Echvi_0363 0.88 +0.3
391,147 + Echvi_0363 0.90 -2.1
391,147 + Echvi_0363 0.90 -0.9
391,205 - +0.2
391,232 + -0.4
391,233 - +2.1
391,357 - +0.0
391,362 - -0.7
391,401 - -0.4
391,450 + +0.1
391,450 + -1.3
391,450 + +0.7
391,494 - -0.3
391,498 + +1.2
391,513 - +0.1
391,517 + -0.4
391,566 - +0.4
391,654 + Echvi_0364 0.19 -1.5
391,654 + Echvi_0364 0.19 -1.4
391,654 + Echvi_0364 0.19 +0.6
391,654 + Echvi_0364 0.19 +0.3
391,654 + Echvi_0364 0.19 -0.5
391,654 + Echvi_0364 0.19 +0.6
391,655 - Echvi_0364 0.19 -0.6
391,655 - Echvi_0364 0.19 +1.2
391,655 - Echvi_0364 0.19 -0.3
391,655 - Echvi_0364 0.19 +0.2
391,658 + Echvi_0364 0.19 +0.3
391,666 + Echvi_0364 0.20 -1.2
391,703 - Echvi_0364 0.25 +0.9
391,730 - Echvi_0364 0.29 +0.1
391,735 - Echvi_0364 0.29 +1.1
391,735 - Echvi_0364 0.29 +0.6
391,735 - Echvi_0364 0.29 -0.0
391,739 - Echvi_0364 0.30 -0.1
391,751 - Echvi_0364 0.32 -0.6
391,751 - Echvi_0364 0.32 -0.0
391,760 - Echvi_0364 0.33 +1.0
391,780 + Echvi_0364 0.35 +0.9
391,917 - Echvi_0364 0.54 -0.0
391,917 - Echvi_0364 0.54 +0.9
392,008 + Echvi_0364 0.66 -1.9
392,008 + Echvi_0364 0.66 +0.2
392,008 + Echvi_0364 0.66 +0.8
392,008 + Echvi_0364 0.66 +0.4
392,112 + Echvi_0364 0.80 +1.8
392,166 - Echvi_0364 0.87 -1.7
392,168 - Echvi_0364 0.87 +0.2
392,168 - Echvi_0364 0.87 -0.2
392,169 + Echvi_0364 0.87 +0.8
392,169 + Echvi_0364 0.87 -0.3
392,169 + Echvi_0364 0.87 -0.2
392,170 - Echvi_0364 0.87 +1.6
392,180 + Echvi_0364 0.89 -0.7
392,189 - Echvi_0364 0.90 -1.4

Or see this region's nucleotide sequence