Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0299

Experiment: m.b. Tetracycline 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0298 and Echvi_0299 overlap by 4 nucleotidesEchvi_0299 and Echvi_0300 overlap by 4 nucleotidesEchvi_0300 and Echvi_0301 are separated by 1 nucleotides Echvi_0298: Echvi_0298 - gliding-associated putative ABC transporter substrate-binding component GldG, at 308,653 to 310,368 _0298 Echvi_0299: Echvi_0299 - gliding motility-associated ABC transporter permease protein GldF, at 310,365 to 311,087 _0299 Echvi_0300: Echvi_0300 - gliding motility-associated ABC transporter ATP-binding subunit GldA, at 311,084 to 312,001 _0300 Echvi_0301: Echvi_0301 - Short-chain dehydrogenases of various substrate specificities, at 312,003 to 312,776 _0301 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1at 309.384 kb on - strand, within Echvi_0298at 309.415 kb on - strand, within Echvi_0298at 309.431 kb on + strand, within Echvi_0298at 309.431 kb on + strand, within Echvi_0298at 309.432 kb on - strand, within Echvi_0298at 309.552 kb on + strand, within Echvi_0298at 309.552 kb on + strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.572 kb on + strand, within Echvi_0298at 309.573 kb on - strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.575 kb on - strand, within Echvi_0298at 309.674 kb on + strand, within Echvi_0298at 309.684 kb on - strand, within Echvi_0298at 309.795 kb on + strand, within Echvi_0298at 309.796 kb on - strand, within Echvi_0298at 309.796 kb on - strand, within Echvi_0298at 309.809 kb on + strand, within Echvi_0298at 309.809 kb on + strand, within Echvi_0298at 309.810 kb on - strand, within Echvi_0298at 309.810 kb on - strand, within Echvi_0298at 309.838 kb on + strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.928 kb on - strand, within Echvi_0298at 309.972 kb on + strand, within Echvi_0298at 309.998 kb on + strand, within Echvi_0298at 309.998 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.026 kb on + strand, within Echvi_0298at 310.033 kb on + strand, within Echvi_0298at 310.052 kb on + strand, within Echvi_0298at 310.079 kb on + strand, within Echvi_0298at 310.080 kb on - strand, within Echvi_0298at 310.207 kb on - strandat 310.207 kb on - strandat 310.222 kb on - strandat 310.222 kb on - strandat 310.383 kb on + strandat 310.420 kb on - strandat 310.462 kb on - strand, within Echvi_0299at 310.472 kb on - strand, within Echvi_0299at 310.514 kb on + strand, within Echvi_0299at 310.514 kb on + strand, within Echvi_0299at 310.515 kb on - strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.528 kb on - strand, within Echvi_0299at 310.599 kb on - strand, within Echvi_0299at 310.654 kb on - strand, within Echvi_0299at 310.654 kb on - strand, within Echvi_0299at 310.695 kb on - strand, within Echvi_0299at 310.700 kb on + strand, within Echvi_0299at 310.700 kb on + strand, within Echvi_0299at 310.738 kb on + strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.744 kb on - strand, within Echvi_0299at 310.792 kb on + strand, within Echvi_0299at 310.792 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.804 kb on - strand, within Echvi_0299at 310.821 kb on + strand, within Echvi_0299at 310.901 kb on + strand, within Echvi_0299at 310.901 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.915 kb on + strand, within Echvi_0299at 310.915 kb on + strand, within Echvi_0299at 310.916 kb on - strand, within Echvi_0299at 310.916 kb on - strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.924 kb on + strand, within Echvi_0299at 310.958 kb on - strand, within Echvi_0299at 311.033 kb on - strandat 311.071 kb on + strandat 311.076 kb on + strandat 311.077 kb on - strandat 311.077 kb on - strandat 311.102 kb on + strandat 311.103 kb on - strandat 311.114 kb on + strandat 311.233 kb on - strand, within Echvi_0300at 311.233 kb on - strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.316 kb on + strand, within Echvi_0300at 311.317 kb on - strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.346 kb on - strand, within Echvi_0300at 311.437 kb on + strand, within Echvi_0300at 311.522 kb on - strand, within Echvi_0300at 311.536 kb on + strand, within Echvi_0300at 311.649 kb on - strand, within Echvi_0300at 311.651 kb on + strand, within Echvi_0300at 311.651 kb on + strand, within Echvi_0300at 311.694 kb on + strand, within Echvi_0300at 311.742 kb on + strand, within Echvi_0300at 311.752 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.881 kb on + strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.932 kb on + strandat 311.967 kb on + strandat 311.970 kb on + strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.978 kb on + strandat 311.987 kb on + strandat 311.987 kb on + strandat 312.048 kb on + strandat 312.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.12 mg/ml
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309,384 - Echvi_0298 0.43 -1.3
309,415 - Echvi_0298 0.44 -2.1
309,431 + Echvi_0298 0.45 -2.5
309,431 + Echvi_0298 0.45 -0.6
309,432 - Echvi_0298 0.45 -3.6
309,552 + Echvi_0298 0.52 -0.8
309,552 + Echvi_0298 0.52 +0.2
309,558 - Echvi_0298 0.53 -3.0
309,558 - Echvi_0298 0.53 -1.2
309,558 - Echvi_0298 0.53 -3.0
309,572 + Echvi_0298 0.54 -1.0
309,573 - Echvi_0298 0.54 -0.2
309,574 + Echvi_0298 0.54 -1.8
309,574 + Echvi_0298 0.54 -0.6
309,574 + Echvi_0298 0.54 -1.0
309,574 + Echvi_0298 0.54 -0.5
309,575 - Echvi_0298 0.54 -2.5
309,674 + Echvi_0298 0.59 -1.2
309,684 - Echvi_0298 0.60 -1.7
309,795 + Echvi_0298 0.67 -0.3
309,796 - Echvi_0298 0.67 -0.4
309,796 - Echvi_0298 0.67 -0.7
309,809 + Echvi_0298 0.67 +0.2
309,809 + Echvi_0298 0.67 -0.1
309,810 - Echvi_0298 0.67 +0.6
309,810 - Echvi_0298 0.67 -2.2
309,838 + Echvi_0298 0.69 -0.7
309,839 - Echvi_0298 0.69 -1.1
309,839 - Echvi_0298 0.69 -0.4
309,839 - Echvi_0298 0.69 -2.0
309,928 - Echvi_0298 0.74 -0.8
309,972 + Echvi_0298 0.77 -0.6
309,998 + Echvi_0298 0.78 -1.2
309,998 + Echvi_0298 0.78 -1.1
310,005 + Echvi_0298 0.79 -0.7
310,005 + Echvi_0298 0.79 -1.2
310,005 + Echvi_0298 0.79 -1.1
310,005 + Echvi_0298 0.79 -1.5
310,005 + Echvi_0298 0.79 -0.7
310,005 + Echvi_0298 0.79 -3.2
310,006 - Echvi_0298 0.79 -1.1
310,006 - Echvi_0298 0.79 -0.4
310,006 - Echvi_0298 0.79 -2.4
310,006 - Echvi_0298 0.79 -0.7
310,006 - Echvi_0298 0.79 -0.5
310,007 + Echvi_0298 0.79 -1.8
310,007 + Echvi_0298 0.79 -0.4
310,007 + Echvi_0298 0.79 -0.2
310,007 + Echvi_0298 0.79 -1.8
310,007 + Echvi_0298 0.79 -0.4
310,007 + Echvi_0298 0.79 -0.6
310,007 + Echvi_0298 0.79 -0.5
310,007 + Echvi_0298 0.79 -1.6
310,007 + Echvi_0298 0.79 -0.5
310,008 - Echvi_0298 0.79 -1.4
310,008 - Echvi_0298 0.79 -0.4
310,008 - Echvi_0298 0.79 -2.1
310,008 - Echvi_0298 0.79 -1.8
310,008 - Echvi_0298 0.79 +0.3
310,008 - Echvi_0298 0.79 -1.3
310,008 - Echvi_0298 0.79 -1.1
310,008 - Echvi_0298 0.79 +0.1
310,026 + Echvi_0298 0.80 -1.1
310,033 + Echvi_0298 0.80 -0.4
310,052 + Echvi_0298 0.82 -1.6
310,079 + Echvi_0298 0.83 -0.9
310,080 - Echvi_0298 0.83 -1.0
310,207 - -0.2
310,207 - -1.2
310,222 - -2.1
310,222 - -1.4
310,383 + -2.7
310,420 - -1.1
310,462 - Echvi_0299 0.13 -0.5
310,472 - Echvi_0299 0.15 -1.4
310,514 + Echvi_0299 0.21 -1.7
310,514 + Echvi_0299 0.21 -1.2
310,515 - Echvi_0299 0.21 -0.0
310,527 + Echvi_0299 0.22 -1.1
310,527 + Echvi_0299 0.22 -1.1
310,527 + Echvi_0299 0.22 -1.1
310,528 - Echvi_0299 0.23 -0.9
310,599 - Echvi_0299 0.32 -1.7
310,654 - Echvi_0299 0.40 -1.9
310,654 - Echvi_0299 0.40 +0.1
310,695 - Echvi_0299 0.46 -0.9
310,700 + Echvi_0299 0.46 -1.0
310,700 + Echvi_0299 0.46 -0.4
310,738 + Echvi_0299 0.52 -0.5
310,739 - Echvi_0299 0.52 -1.1
310,739 - Echvi_0299 0.52 -1.6
310,739 - Echvi_0299 0.52 -1.1
310,739 - Echvi_0299 0.52 -1.6
310,744 - Echvi_0299 0.52 -1.0
310,792 + Echvi_0299 0.59 -0.6
310,792 + Echvi_0299 0.59 -1.5
310,803 + Echvi_0299 0.61 -0.5
310,803 + Echvi_0299 0.61 -1.8
310,803 + Echvi_0299 0.61 -1.6
310,803 + Echvi_0299 0.61 -1.1
310,804 - Echvi_0299 0.61 -0.5
310,821 + Echvi_0299 0.63 -1.2
310,901 + Echvi_0299 0.74 -2.4
310,901 + Echvi_0299 0.74 -0.7
310,911 + Echvi_0299 0.76 -0.9
310,911 + Echvi_0299 0.76 -0.9
310,911 + Echvi_0299 0.76 -0.9
310,911 + Echvi_0299 0.76 -1.2
310,911 + Echvi_0299 0.76 -1.2
310,912 - Echvi_0299 0.76 -1.7
310,912 - Echvi_0299 0.76 -0.4
310,912 - Echvi_0299 0.76 -0.9
310,912 - Echvi_0299 0.76 -2.0
310,912 - Echvi_0299 0.76 -1.5
310,912 - Echvi_0299 0.76 -0.4
310,912 - Echvi_0299 0.76 -2.1
310,912 - Echvi_0299 0.76 -2.2
310,912 - Echvi_0299 0.76 -1.4
310,915 + Echvi_0299 0.76 -1.3
310,915 + Echvi_0299 0.76 -1.3
310,916 - Echvi_0299 0.76 -1.8
310,916 - Echvi_0299 0.76 -2.4
310,922 + Echvi_0299 0.77 +1.6
310,922 + Echvi_0299 0.77 +1.6
310,922 + Echvi_0299 0.77 -1.2
310,922 + Echvi_0299 0.77 -1.0
310,922 + Echvi_0299 0.77 -1.2
310,922 + Echvi_0299 0.77 -1.9
310,924 + Echvi_0299 0.77 -0.9
310,958 - Echvi_0299 0.82 -1.3
311,033 - +0.5
311,071 + -1.5
311,076 + -1.0
311,077 - +0.3
311,077 - +0.4
311,102 + -1.2
311,103 - +1.1
311,114 + -0.8
311,233 - Echvi_0300 0.16 +0.0
311,233 - Echvi_0300 0.16 -0.4
311,246 + Echvi_0300 0.18 +0.9
311,246 + Echvi_0300 0.18 -0.9
311,247 - Echvi_0300 0.18 -0.1
311,247 - Echvi_0300 0.18 +0.3
311,316 + Echvi_0300 0.25 -0.4
311,317 - Echvi_0300 0.25 -0.1
311,345 + Echvi_0300 0.28 -1.3
311,345 + Echvi_0300 0.28 -0.7
311,346 - Echvi_0300 0.29 +0.5
311,437 + Echvi_0300 0.38 -2.3
311,522 - Echvi_0300 0.48 +0.3
311,536 + Echvi_0300 0.49 -1.5
311,649 - Echvi_0300 0.62 -0.4
311,651 + Echvi_0300 0.62 -1.3
311,651 + Echvi_0300 0.62 -1.4
311,694 + Echvi_0300 0.66 -1.2
311,742 + Echvi_0300 0.72 -1.2
311,752 + Echvi_0300 0.73 -1.5
311,819 + Echvi_0300 0.80 -1.3
311,819 + Echvi_0300 0.80 +0.3
311,819 + Echvi_0300 0.80 +1.4
311,881 + Echvi_0300 0.87 -0.8
311,882 - Echvi_0300 0.87 +0.5
311,882 - Echvi_0300 0.87 +0.7
311,932 + -1.0
311,967 + -0.8
311,970 + -0.4
311,971 - +0.4
311,971 - +0.9
311,971 - +0.6
311,971 - -0.3
311,978 + -0.8
311,987 + -1.6
311,987 + -0.5
312,048 + -0.6
312,055 + -0.8

Or see this region's nucleotide sequence