Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0137

Experiment: m.b. Tetracycline 0.12 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0135 and Echvi_0136 are separated by 6 nucleotidesEchvi_0136 and Echvi_0137 are separated by 254 nucleotidesEchvi_0137 and Echvi_0138 are separated by 132 nucleotides Echvi_0135: Echvi_0135 - Uncharacterized protein conserved in bacteria, at 134,256 to 135,263 _0135 Echvi_0136: Echvi_0136 - Membrane-bound serine protease (ClpP class), at 135,270 to 135,728 _0136 Echvi_0137: Echvi_0137 - prolyl-tRNA synthetase, family I, at 135,983 to 137,464 _0137 Echvi_0138: Echvi_0138 - hypothetical protein, at 137,597 to 138,910 _0138 Position (kb) 135 136 137 138Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 134.997 kb on + strand, within Echvi_0135at 135.087 kb on - strand, within Echvi_0135at 135.239 kb on + strandat 135.255 kb on + strandat 135.256 kb on - strandat 135.264 kb on - strandat 135.264 kb on - strandat 135.264 kb on - strandat 135.267 kb on - strandat 135.267 kb on - strandat 135.267 kb on - strandat 135.269 kb on - strandat 135.271 kb on + strandat 135.271 kb on + strandat 135.271 kb on + strandat 135.272 kb on - strandat 135.276 kb on - strandat 135.287 kb on + strandat 135.287 kb on + strandat 135.297 kb on + strandat 135.454 kb on + strand, within Echvi_0136at 135.454 kb on + strand, within Echvi_0136at 135.455 kb on - strand, within Echvi_0136at 135.464 kb on + strand, within Echvi_0136at 135.465 kb on - strand, within Echvi_0136at 135.498 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.532 kb on - strand, within Echvi_0136at 135.533 kb on + strand, within Echvi_0136at 135.541 kb on - strand, within Echvi_0136at 135.703 kb on - strandat 135.762 kb on - strandat 135.793 kb on + strandat 135.886 kb on + strandat 135.911 kb on + strandat 135.911 kb on + strandat 135.911 kb on + strandat 135.912 kb on - strandat 135.933 kb on - strandat 135.975 kb on + strandat 135.976 kb on - strandat 135.976 kb on - strandat 137.564 kb on + strandat 137.566 kb on + strandat 137.568 kb on + strandat 137.596 kb on + strandat 137.597 kb on - strandat 137.669 kb on + strandat 137.670 kb on - strandat 137.670 kb on - strandat 137.670 kb on - strandat 137.672 kb on - strandat 137.703 kb on - strandat 137.755 kb on + strand, within Echvi_0138at 137.755 kb on + strand, within Echvi_0138at 137.756 kb on - strand, within Echvi_0138at 137.777 kb on + strand, within Echvi_0138at 137.847 kb on - strand, within Echvi_0138at 137.859 kb on - strand, within Echvi_0138at 137.900 kb on + strand, within Echvi_0138at 137.958 kb on + strand, within Echvi_0138at 137.958 kb on + strand, within Echvi_0138at 137.959 kb on - strand, within Echvi_0138at 137.959 kb on - strand, within Echvi_0138at 137.966 kb on + strand, within Echvi_0138at 137.967 kb on - strand, within Echvi_0138at 137.986 kb on + strand, within Echvi_0138at 137.987 kb on - strand, within Echvi_0138at 138.029 kb on + strand, within Echvi_0138at 138.029 kb on + strand, within Echvi_0138at 138.029 kb on + strand, within Echvi_0138at 138.029 kb on + strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.030 kb on - strand, within Echvi_0138at 138.031 kb on + strand, within Echvi_0138at 138.031 kb on + strand, within Echvi_0138at 138.031 kb on + strand, within Echvi_0138at 138.032 kb on - strand, within Echvi_0138at 138.050 kb on + strand, within Echvi_0138at 138.051 kb on - strand, within Echvi_0138at 138.092 kb on + strand, within Echvi_0138at 138.092 kb on + strand, within Echvi_0138at 138.093 kb on - strand, within Echvi_0138at 138.093 kb on - strand, within Echvi_0138at 138.093 kb on - strand, within Echvi_0138at 138.093 kb on - strand, within Echvi_0138at 138.093 kb on - strand, within Echvi_0138at 138.191 kb on + strand, within Echvi_0138at 138.210 kb on - strand, within Echvi_0138at 138.221 kb on + strand, within Echvi_0138at 138.222 kb on - strand, within Echvi_0138at 138.241 kb on + strand, within Echvi_0138at 138.241 kb on + strand, within Echvi_0138at 138.241 kb on + strand, within Echvi_0138at 138.241 kb on + strand, within Echvi_0138at 138.242 kb on - strand, within Echvi_0138at 138.242 kb on - strand, within Echvi_0138at 138.245 kb on + strand, within Echvi_0138at 138.252 kb on - strand, within Echvi_0138at 138.263 kb on + strand, within Echvi_0138at 138.264 kb on - strand, within Echvi_0138at 138.273 kb on - strand, within Echvi_0138at 138.275 kb on + strand, within Echvi_0138at 138.276 kb on - strand, within Echvi_0138at 138.276 kb on - strand, within Echvi_0138at 138.276 kb on - strand, within Echvi_0138at 138.276 kb on - strand, within Echvi_0138at 138.288 kb on - strand, within Echvi_0138at 138.290 kb on + strand, within Echvi_0138at 138.290 kb on + strand, within Echvi_0138at 138.291 kb on - strand, within Echvi_0138at 138.302 kb on - strand, within Echvi_0138at 138.309 kb on + strand, within Echvi_0138at 138.309 kb on + strand, within Echvi_0138at 138.310 kb on - strand, within Echvi_0138at 138.310 kb on - strand, within Echvi_0138at 138.320 kb on + strand, within Echvi_0138at 138.320 kb on + strand, within Echvi_0138at 138.320 kb on + strand, within Echvi_0138at 138.321 kb on - strand, within Echvi_0138at 138.321 kb on - strand, within Echvi_0138at 138.439 kb on + strand, within Echvi_0138at 138.440 kb on - strand, within Echvi_0138at 138.440 kb on - strand, within Echvi_0138at 138.450 kb on + strand, within Echvi_0138

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.12 mg/ml
remove
134,997 + Echvi_0135 0.74 -1.7
135,087 - Echvi_0135 0.82 -0.3
135,239 + +0.4
135,255 + +0.4
135,256 - +1.2
135,264 - +3.0
135,264 - -1.8
135,264 - -0.7
135,267 - -0.5
135,267 - +1.2
135,267 - +1.6
135,269 - -0.2
135,271 + -0.1
135,271 + +0.1
135,271 + +0.7
135,272 - +1.0
135,276 - +0.3
135,287 + +0.3
135,287 + +0.1
135,297 + +0.4
135,454 + Echvi_0136 0.40 -0.9
135,454 + Echvi_0136 0.40 +0.6
135,455 - Echvi_0136 0.40 +0.6
135,464 + Echvi_0136 0.42 -0.3
135,465 - Echvi_0136 0.42 -0.5
135,498 + Echvi_0136 0.50 -0.4
135,531 + Echvi_0136 0.57 -1.9
135,531 + Echvi_0136 0.57 +0.2
135,531 + Echvi_0136 0.57 -0.6
135,532 - Echvi_0136 0.57 -1.4
135,533 + Echvi_0136 0.57 -1.4
135,541 - Echvi_0136 0.59 -1.4
135,703 - -0.0
135,762 - -0.2
135,793 + -0.5
135,886 + -0.6
135,911 + +0.7
135,911 + +1.2
135,911 + -0.8
135,912 - -0.7
135,933 - +1.2
135,975 + +2.4
135,976 - +0.1
135,976 - +1.2
137,564 + +0.4
137,566 + +0.4
137,568 + -0.1
137,596 + +1.6
137,597 - +0.1
137,669 + -0.8
137,670 - -0.8
137,670 - +1.0
137,670 - -1.4
137,672 - -1.3
137,703 - -1.9
137,755 + Echvi_0138 0.12 -0.9
137,755 + Echvi_0138 0.12 -0.7
137,756 - Echvi_0138 0.12 -1.2
137,777 + Echvi_0138 0.14 -2.1
137,847 - Echvi_0138 0.19 -0.0
137,859 - Echvi_0138 0.20 -0.5
137,900 + Echvi_0138 0.23 -0.3
137,958 + Echvi_0138 0.27 -1.7
137,958 + Echvi_0138 0.27 -0.0
137,959 - Echvi_0138 0.28 -1.5
137,959 - Echvi_0138 0.28 -0.9
137,966 + Echvi_0138 0.28 +0.6
137,967 - Echvi_0138 0.28 +0.1
137,986 + Echvi_0138 0.30 -1.8
137,987 - Echvi_0138 0.30 -0.6
138,029 + Echvi_0138 0.33 -1.0
138,029 + Echvi_0138 0.33 +0.6
138,029 + Echvi_0138 0.33 -1.4
138,029 + Echvi_0138 0.33 -1.3
138,030 - Echvi_0138 0.33 -1.7
138,030 - Echvi_0138 0.33 -1.2
138,030 - Echvi_0138 0.33 +0.6
138,030 - Echvi_0138 0.33 -0.7
138,030 - Echvi_0138 0.33 -1.7
138,030 - Echvi_0138 0.33 +0.2
138,030 - Echvi_0138 0.33 -0.3
138,030 - Echvi_0138 0.33 -4.2
138,030 - Echvi_0138 0.33 -1.9
138,031 + Echvi_0138 0.33 -1.4
138,031 + Echvi_0138 0.33 -0.9
138,031 + Echvi_0138 0.33 -0.2
138,032 - Echvi_0138 0.33 -0.8
138,050 + Echvi_0138 0.34 -1.0
138,051 - Echvi_0138 0.35 -1.1
138,092 + Echvi_0138 0.38 -0.7
138,092 + Echvi_0138 0.38 -0.5
138,093 - Echvi_0138 0.38 -1.3
138,093 - Echvi_0138 0.38 -0.8
138,093 - Echvi_0138 0.38 +0.1
138,093 - Echvi_0138 0.38 -1.5
138,093 - Echvi_0138 0.38 +0.1
138,191 + Echvi_0138 0.45 -1.4
138,210 - Echvi_0138 0.47 +0.0
138,221 + Echvi_0138 0.47 -1.9
138,222 - Echvi_0138 0.48 -1.7
138,241 + Echvi_0138 0.49 -0.1
138,241 + Echvi_0138 0.49 -0.7
138,241 + Echvi_0138 0.49 -0.2
138,241 + Echvi_0138 0.49 -0.1
138,242 - Echvi_0138 0.49 -2.3
138,242 - Echvi_0138 0.49 -0.9
138,245 + Echvi_0138 0.49 -1.6
138,252 - Echvi_0138 0.50 -1.3
138,263 + Echvi_0138 0.51 -0.0
138,264 - Echvi_0138 0.51 -1.5
138,273 - Echvi_0138 0.51 -0.3
138,275 + Echvi_0138 0.52 -0.1
138,276 - Echvi_0138 0.52 -1.8
138,276 - Echvi_0138 0.52 +1.2
138,276 - Echvi_0138 0.52 -1.1
138,276 - Echvi_0138 0.52 -2.1
138,288 - Echvi_0138 0.53 -0.2
138,290 + Echvi_0138 0.53 -0.9
138,290 + Echvi_0138 0.53 -0.0
138,291 - Echvi_0138 0.53 -0.8
138,302 - Echvi_0138 0.54 +0.1
138,309 + Echvi_0138 0.54 -1.2
138,309 + Echvi_0138 0.54 +1.2
138,310 - Echvi_0138 0.54 -1.1
138,310 - Echvi_0138 0.54 -1.4
138,320 + Echvi_0138 0.55 -1.2
138,320 + Echvi_0138 0.55 -0.8
138,320 + Echvi_0138 0.55 -1.2
138,321 - Echvi_0138 0.55 -0.2
138,321 - Echvi_0138 0.55 -2.0
138,439 + Echvi_0138 0.64 -3.2
138,440 - Echvi_0138 0.64 -0.3
138,440 - Echvi_0138 0.64 -1.5
138,450 + Echvi_0138 0.65 -0.7

Or see this region's nucleotide sequence